Comparing Pf6N2E2_530 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_530 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
7yleA Rndmpx in complex with dmsp (see paper)
26% identity, 91% coverage: 30:334/336 of query aligns to 5:296/299 of 7yleA
4xz6A Tmox in complex with tmao (see paper)
26% identity, 88% coverage: 29:324/336 of query aligns to 9:289/291 of 4xz6A
Q5LT66 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
26% identity, 88% coverage: 29:324/336 of query aligns to 51:331/333 of Q5LT66
Sites not aligning to the query:
Q4FL33 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Pelagibacter ubique (strain HTCC1062) (see paper)
24% identity, 95% coverage: 1:320/336 of query aligns to 1:309/314 of Q4FL33
P0AFM2 Glycine betaine/proline betaine-binding periplasmic protein; GBBP from Escherichia coli (strain K12) (see 2 papers)
24% identity, 77% coverage: 71:329/336 of query aligns to 72:327/330 of P0AFM2
Sites not aligning to the query:
1r9qA Structure analysis of prox in complex with proline betaine (see paper)
24% identity, 77% coverage: 71:329/336 of query aligns to 51:306/309 of 1r9qA
Sites not aligning to the query:
3chgA The compatible solute-binding protein opuac from bacillus subtilis in complex with dmsa (see paper)
24% identity, 46% coverage: 178:333/336 of query aligns to 21:158/258 of 3chgA
Sites not aligning to the query:
5nxxC Crystal structure of opuac from b. Subtilis in complex with arsenobetaine (see paper)
24% identity, 46% coverage: 178:333/336 of query aligns to 28:165/265 of 5nxxC
Sites not aligning to the query:
2b4mA Crystal structure of the binding protein opuac in complex with proline betaine (see paper)
24% identity, 46% coverage: 178:333/336 of query aligns to 27:164/264 of 2b4mA
Sites not aligning to the query:
2rinA Abc-transporter choline binding protein in complex with acetylcholine (see paper)
23% identity, 37% coverage: 200:324/336 of query aligns to 158:267/288 of 2rinA
Sites not aligning to the query:
2regA Abc-transporter choline binding protein in complex with choline (see paper)
23% identity, 37% coverage: 200:324/336 of query aligns to 160:269/290 of 2regA
Sites not aligning to the query:
>Pf6N2E2_530 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_530
MKRVRQWLAAWATFTVLVSPFPTLAASAPIHFADLNWESGSLITDILRIIVEKGYGLQTD
TLPGTTITLETALANNDIQVIGEEWAGRSPVWVKAEAEGKVVALGDTVKGATEGWWVPEY
VIKGDPAKGIKPLAPDLRSVEDLARYKHVFKDPESPDKGRFLNSPIGWTSEVVNKQKLKA
YGLSDSYVNFRSGSGAALDAEISSTIRRGKPILFYYWSPTPLLGRFKLVQLQEPPFDAEA
WKTLTDADNPNPKPTRSLASKLSIGVSAPFQKQYPDIAEFFSKVDLPIEPLNKALADMSE
KRIPPREAAEAFLKAHPQVWQAWLPKEVADKVSAGL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory