Comparing Pf6N2E2_5557 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5557 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
56% identity, 100% coverage: 1:458/458 of query aligns to 1:448/448 of 4rqoB
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
47% identity, 30% coverage: 17:155/458 of query aligns to 1:135/140 of 2iafA
>Pf6N2E2_5557 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5557
MSLSVFDLFKIGIGPSSSHTVGPMRAAARFAEGLRRDDLLNCTTSVKVELYGSLGATGKG
HGSDKAVLLGLEGEHPDTVDTETVDARLQAIRSSGRLNLLGEHSIEFNEKLHLAMIRKPL
AFHPNGMIFRAFDAAGLQVRSREYYSVGGGFVVDEGAAGADRIVEDATPLTFPFKSAKDL
LGHCSTYGLSISQVMLTNESAWRPEAETRAGLLKIWQVMQDCVAAGCRNEGILPGGLKVK
RRAAALHRQLCKNPEAALRDPLSVLDWVNLYALAVNEENAYGGRVVTAPTNGAAGIIPAV
LHYYMRFIPGASEDGVVRFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGALCE
VLGGSVQQVENAAEIGMEHNLGLTCDPIGGLVQVPCIERNAMGSVKAINAVRMAMRGDGH
HFVSLDKVIRTMRQTGADMKSKYKETARGGLAVNIIEC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory