Comparing Pf6N2E2_614 3-carboxymuconate cyclase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P52697 6-phosphogluconolactonase; 6-P-gluconolactonase; Pgl; EC 3.1.1.31 from Escherichia coli (strain K12) (see paper)
28% identity, 71% coverage: 93:370/391 of query aligns to 56:311/331 of P52697
1jofB Neurospora crassa 3-carboxy-cis,cis-mucoante lactonizing enzyme (see paper)
25% identity, 60% coverage: 28:262/391 of query aligns to 3:220/365 of 1jofB
Sites not aligning to the query:
>Pf6N2E2_614 3-carboxymuconate cyclase
MKMRSLWPLLMAGSLGAMGVQADTDERHQLLVGSYTAGQSQGIYRLQFDSRTGQLDANPL
QVIKTDNPSWLTLSKDMTRLFVVNENGPGQKDPVGKVSSYAIDPKTHELSLINQVQSLGN
EPTHSSLSGDGRHLLVSNYSVVEDPGGTLAVLPVGADGKLAPVVQLSSHQPSKVNPERQM
SAHVHAAVSSPDGKYVFANDLGADKVFIYRYDPKANPELPLTAADPAFVQLPPGSGPRHL
LFSADGKHAWLTMEMSAQVAVFDYQDGRLTQRQLVDLAAGKPQPGRAAAALHASRDGKFL
YVSNRGTTNEVLVFAIDPAAGTLKELQRRSVEGDHPREFSLDPSGRFLLIANQKSNQIVV
IERDPKTGLLGKTVQKMPMDAPSDLKFMVRQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory