Comparing PfGW456L13_1699 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
33% identity, 33% coverage: 258:388/393 of query aligns to 85:214/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
33% identity, 33% coverage: 258:388/393 of query aligns to 85:214/215 of 4ymtC
Sites not aligning to the query:
>PfGW456L13_1699 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)
MQNSIGAPKQRLSLSDPRVRAWVFQIITIIAVVSLGWYLFDNTQTNLQHRGITSGFDFLE
RSAGFGIAQHLIDYTEADTYARVFVIGLLNTLLVTFIGVILATILGFIVGVARLSKNWII
AKLATVYVEVFRNIPPLLQILFWYFAVFLTMPGPRNSHNFGDTFFVSSRGLNMPAALMAD
GFWPFMTSVVVAIVAIVLMSRWATKRFEATGVPFHKFWVGLAMFLVIPALCALIFGAPVH
WEMPKLQGFNFVGGWVLIPELLALTLALTVYTAAFIAEIVRSGIKSVSHGQTEAAHSLGL
RNGPTLRKVIIPQALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAI
EVIAITMSVYLAISISISLLMNWYNKRIALIER
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory