SitesBLAST
Comparing PfGW456L13_2 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5tjrD X-ray crystal structure of a methylmalonate semialdehyde dehydrogenase from pseudomonas sp. Aac (see paper)
84% identity, 99% coverage: 2:494/497 of query aligns to 1:468/468 of 5tjrD
- active site: N144 (= N149), K167 (= K172), L241 (= L246), C270 (= C280), E356 (= E382), A436 (= A462)
- binding adenosine-5'-diphosphate: I140 (= I145), T141 (= T146), F143 (= F148), K167 (= K172), E170 (= E175), K200 (= K205), F217 (= F222), S220 (= S225), I223 (= I228)
4zz7A Crystal structure of methylmalonate-semialdehyde dehydrogenase (dddc) from oceanimonas doudoroffii (see paper)
69% identity, 98% coverage: 1:488/497 of query aligns to 1:488/489 of 4zz7A
- active site: N149 (= N149), K172 (= K172), L246 (= L246), C280 (= C280), E382 (= E382), A462 (= A462)
- binding nicotinamide-adenine-dinucleotide: T146 (= T146), P147 (= P147), F148 (= F148), N149 (= N149), K172 (= K172), E175 (= E175), K205 (= K205), V208 (= V208), F222 (= F222), V223 (= V223), G224 (= G224), S225 (= S225), I228 (= I228), L246 (= L246), G247 (= G247), C280 (= C280), E382 (= E382), F384 (= F384)
4iymC Crystal structure of putative methylmalonate-semialdehyde dehydrogenase from sinorhizobium meliloti 1021 complexed with NAD, target 011934
55% identity, 97% coverage: 1:483/497 of query aligns to 4:487/491 of 4iymC
- active site: N153 (= N149), K176 (= K172), F250 (≠ L246), C284 (= C280), E386 (= E382), Q466 (≠ A462)
- binding nicotinamide-adenine-dinucleotide: I149 (= I145), T150 (= T146), P151 (= P147), F152 (= F148), N153 (= N149), F154 (= F150), K176 (= K172), K209 (= K205), V212 (= V208), F226 (= F222), V227 (= V223), G228 (= G224), S229 (= S225), I232 (= I228), G251 (= G247), C284 (= C280), E386 (= E382), F388 (= F384)
P42412 Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis (strain 168) (see 3 papers)
46% identity, 96% coverage: 4:482/497 of query aligns to 7:482/487 of P42412
- C36 (≠ H32) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-160; A-287; A-351 and A-413.
- R107 (= R103) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- A150 (≠ T146) binding
- F152 (= F148) binding
- C160 (≠ L156) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-287; A-351 and A-413.
- K176 (= K172) binding
- E179 (= E175) binding
- R180 (= R176) binding
- S229 (= S225) binding
- T251 (≠ G247) binding
- R283 (= R279) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- C287 (≠ I283) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-351 and A-413.
- C351 (≠ V348) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-413.
- E382 (= E382) binding
- C413 (= C413) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-351.
1t90A Crystal structure of methylmalonate semialdehyde dehydrogenase from bacillus subtilis
46% identity, 96% coverage: 4:482/497 of query aligns to 5:480/484 of 1t90A
- active site: N151 (= N149), K174 (= K172), L248 (= L246), C282 (= C280), E380 (= E382), A460 (= A462)
- binding nicotinamide-adenine-dinucleotide: I147 (= I145), A148 (≠ T146), P149 (= P147), F150 (= F148), N151 (= N149), W159 (= W157), K174 (= K172), E177 (= E175), R178 (= R176), H207 (≠ K205), V225 (= V223), G226 (= G224), S227 (= S225), V230 (≠ I228), L248 (= L246), T249 (≠ G247), C282 (= C280), E380 (= E382), F382 (= F384)
5izdA Wild-type glyceraldehyde dehydrogenase from thermoplasma acidophilum in complex with NADP
32% identity, 89% coverage: 8:448/497 of query aligns to 7:448/494 of 5izdA
- active site: N149 (= N149), K172 (= K172), E247 (≠ A245), C281 (= C280), E381 (= E382)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: L145 (≠ I145), T146 (= T146), W148 (≠ F148), K172 (= K172), P173 (= P173), S174 (= S174), S175 (≠ E175), R204 (≠ D204), G205 (≠ K205), G209 (vs. gap), D210 (= D209), G225 (= G224), S226 (= S225), T229 (≠ I228)
Sites not aligning to the query:
5gtlA NADPH complex structure of aldehyde dehydrogenase from bacillus cereus
31% identity, 95% coverage: 4:477/497 of query aligns to 17:486/491 of 5gtlA
- active site: N165 (= N149), K188 (= K172), E263 (≠ L246), C297 (= C280), E394 (= E382), E471 (≠ D459)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I161 (= I145), P163 (= P147), K188 (= K172), A190 (≠ S174), E191 (= E175), Q192 (≠ R176), G221 (≠ D204), G225 (≠ V208), G241 (= G224), S242 (= S225), T245 (≠ I228), L264 (≠ G247), C297 (= C280), E394 (= E382), F396 (= F384)
5gtkA NAD+ complex structure of aldehyde dehydrogenase from bacillus cereus
31% identity, 95% coverage: 4:477/497 of query aligns to 17:486/491 of 5gtkA
- active site: N165 (= N149), K188 (= K172), E263 (≠ L246), C297 (= C280), E394 (= E382), E471 (≠ D459)
- binding nicotinamide-adenine-dinucleotide: I161 (= I145), I162 (≠ T146), P163 (= P147), W164 (≠ F148), K188 (= K172), E191 (= E175), G221 (≠ D204), G225 (≠ V208), A226 (≠ D209), F239 (= F222), G241 (= G224), S242 (= S225), T245 (≠ I228), Y248 (= Y231), L264 (≠ G247), C297 (= C280), Q344 (≠ A328), R347 (≠ K331), E394 (= E382), F396 (= F384)
7um9A Human aldh1a1 with bound compound cm38 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 7um9A
- binding nicotinamide-adenine-dinucleotide: I159 (= I145), I160 (≠ T146), P161 (= P147), W162 (≠ F148), N163 (= N149), K186 (= K172), E189 (= E175), G219 (≠ D204), G223 (≠ V208), F237 (= F222), T238 (≠ V223), G239 (= G224), S240 (= S225), V243 (≠ I228), E262 (≠ L246), G264 (= G248), Q343 (≠ A328), K346 (= K331), E393 (= E382), F395 (= F384)
- binding (4-methylfuro[3,2-c]quinolin-2-yl)(piperidin-1-yl)methanone: W171 (= W157), H286 (≠ G270), Y290 (≠ G274), I297 (≠ M281), G451 (≠ P441)
5l2oA Crystal structure of aldh1a1 in complex with buc22 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 5l2oA
5l2nA Structure of aldh1a1 in complex with buc25 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 5l2nA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 3-benzyl-4-methyl-2-oxo-2H-1-benzopyran-7-yl methanesulfonate: F164 (= F150), M168 (≠ V154), W171 (= W157), H286 (≠ G270), G287 (≠ A271), Y290 (≠ G274), C295 (≠ R279), C296 (= C280), I297 (≠ M281), Y450 (≠ L440), G451 (≠ P441), V453 (≠ P443), F459 (= F449)
5l2mA Structure of aldh1a1 in complex with buc11 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 5l2mA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 2,3,5-trimethyl-6-[3-oxo-3-(piperidin-1-yl)propyl]-7H-furo[3,2-g][1]benzopyran-7-one: F164 (= F150), F283 (≠ A267), H286 (≠ G270), Y290 (≠ G274)
4wpnA Structure of human aldh1a1 with inhibitor cm053 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 4wpnA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 1-{[1,3-dimethyl-7-(3-methylbutyl)-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl]methyl}piperidine-4-carboxamide: F164 (= F150), H286 (≠ G270), G287 (≠ A271), Y290 (≠ G274), C295 (≠ R279), I297 (≠ M281), G451 (≠ P441), V453 (≠ P443)
7jwwA Crystal structure of human aldh1a1 bound to compound (r)-28 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 7jwwA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 5-{4-[(Z)-2-hydroxyethenyl]phenyl}-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one: G118 (≠ R103), T122 (≠ N107), F164 (= F150), M168 (≠ V154), Y290 (≠ G274), C295 (≠ R279), C296 (= C280), I297 (≠ M281), V453 (≠ P443), F459 (= F449)
7jwvA Crystal structure of human aldh1a1 bound to compound (r)-28 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 7jwvA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 5-[4-(hydroxymethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one: G118 (≠ R103), T122 (≠ N107), F164 (= F150), M168 (≠ V154), Y290 (≠ G274), C295 (≠ R279), I297 (≠ M281), V453 (≠ P443), F459 (= F449)
7jwuA Crystal structure of human aldh1a1 bound to compound (r)-28 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 7jwuA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding nicotinamide-adenine-dinucleotide: I159 (= I145), I160 (≠ T146), P161 (= P147), W162 (≠ F148), N163 (= N149), K186 (= K172), E189 (= E175), G219 (≠ D204), G223 (≠ V208), A224 (≠ D209), F237 (= F222), T238 (≠ V223), G239 (= G224), S240 (= S225), V243 (≠ I228), L263 (≠ G247), C296 (= C280), Q343 (≠ A328), K346 (= K331), E393 (= E382), F395 (= F384)
- binding 1-methyl-5-phenyl-6-{[(1R)-1-(pyridin-2-yl)ethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one: T122 (≠ N107), F164 (= F150), W171 (= W157), Y290 (≠ G274), C295 (≠ R279), I297 (≠ M281), V453 (≠ P443), F459 (= F449)
7jwtA Crystal structure of human aldh1a1 bound to compound (r)-28 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 7jwtA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 6-{[(1R)-1-(3-hydroxyphenyl)ethyl]sulfanyl}-1-methyl-5-phenyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one: G118 (≠ R103), T122 (≠ N107), F164 (= F150), M168 (≠ V154), W171 (= W157), Y290 (≠ G274), C295 (≠ R279), V453 (≠ P443), F459 (= F449)
7jwsA Crystal structure of human aldh1a1 bound to compound (r)-28 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 7jwsA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 1-methyl-5-phenyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one: G118 (≠ R103), T122 (≠ N107), F164 (= F150), M168 (≠ V154), W171 (= W157), Y290 (≠ G274), C295 (≠ R279), I297 (≠ M281), V453 (≠ P443), F459 (= F449)
6dumA Aldh1a1 n121s in complex with 6-{[(3-fluorophenyl)methyl]sulfanyl}-2- (oxetan-3-yl)-5-phenyl-2,5-dihydro-4h-pyrazolo[3,4-d]pyrimidin-4-one (compound 13g) (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 6dumA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 6-{[(3-fluorophenyl)methyl]sulfanyl}-2-(oxetan-3-yl)-5-phenyl-2,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one: G118 (≠ R103), T122 (≠ N107), F164 (= F150), M168 (≠ V154), W171 (= W157), H286 (≠ G270), Y290 (≠ G274), C295 (≠ R279), C296 (= C280), I297 (≠ M281), G451 (≠ P441), V453 (≠ P443), F459 (= F449)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I159 (= I145), I160 (≠ T146), P161 (= P147), W162 (≠ F148), N163 (= N149), K186 (= K172), E189 (= E175), G219 (≠ D204), P220 (≠ K205), G223 (≠ V208), A224 (≠ D209), F237 (= F222), T238 (≠ V223), G239 (= G224), S240 (= S225), V243 (≠ I228), L263 (≠ G247), C296 (= C280), Q343 (≠ A328), K346 (= K331), E393 (= E382), F395 (= F384)
4wp7A Structure of human aldh1a1 with inhibitor cm026 (see paper)
30% identity, 95% coverage: 16:486/497 of query aligns to 27:494/494 of 4wp7A
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ A462)
- binding 8-{[4-(furan-2-ylcarbonyl)piperazin-1-yl]methyl}-1,3-dimethyl-7-(3-methylbutyl)-3,7-dihydro-1H-purine-2,6-dione: G118 (≠ R103), T122 (≠ N107), F164 (= F150), G287 (≠ A271), Y290 (≠ G274), C295 (≠ R279), I297 (≠ M281), G451 (≠ P441), V453 (≠ P443), A455 (= A445)
Query Sequence
>PfGW456L13_2 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2
MSVIPHLINGELVTENGRAVDVFNPSTGQAIHKLPLATRETIQSAIDAAKAAFPAWRNTP
PAKRAQVMFRFKQLLEQNEARIAQLISEEHGKTLEDAAGELKRGIENVEFACAAPEILKG
EYSRNVGPNIDAWSDFQPLGVVAGITPFNFPAMVPLWMYPLAIVCGNCFILKPSERDPSS
TLLIAQLLLEAGLPKGVLSVVHGDKTAVDALIEAPEVKALSFVGSTPIAEYIYSEGTKRG
KRVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSCGERCMAISVAVCVGEQVADALVAK
LVPQIKALKIGAGTNCGLDMGPLVTGQARDKVSGYVEDGVAAGATLVVDGRGLTVAGHEE
GFFLGGCLFDNVTPEMRIYKEEIFGPVLCVVRVNSLEEAMQLINDHEYGNGTCIFTRDGE
AARLFCDEIEVGMVGVNVPLPVPVAYHSFGGWKRSLFGDLHAYGPDGVRFYTRRKAITQR
WPQRASHEASQFAFPSL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory