Comparing PfGW456L13_2118 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2118 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
Q9A9Z1 D-xylonolactone lactonase; Xylono-1,5-lactonase; EC 3.1.1.110 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) (see paper)
36% identity, 95% coverage: 10:284/291 of query aligns to 12:281/289 of Q9A9Z1
7pldB Caulobacter crescentus xylonolactonase with (r)-4-hydroxy-2- pyrrolidone (see paper)
36% identity, 95% coverage: 10:284/291 of query aligns to 12:281/289 of 7pldB
7plbB Caulobacter crescentus xylonolactonase with d-xylose (see paper)
36% identity, 95% coverage: 10:284/291 of query aligns to 12:281/289 of 7plbB
5gx1A Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 1.1 mgy (1st measurement) (see paper)
30% identity, 88% coverage: 10:266/291 of query aligns to 12:275/307 of 5gx1A
5d9bA Luciferin-regenerating enzyme solved by siras using xfel (refined against native data) (see paper)
30% identity, 88% coverage: 10:266/291 of query aligns to 12:275/307 of 5d9bA
Q15493 Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens (Human) (see 2 papers)
29% identity, 87% coverage: 9:262/291 of query aligns to 12:263/299 of Q15493
4gncA Human smp30/gnl-1,5-ag complex (see paper)
29% identity, 87% coverage: 9:262/291 of query aligns to 11:262/298 of 4gncA
Sites not aligning to the query:
3g4hA Crystal structure of human senescence marker protein-30 (zinc bound) (see paper)
29% identity, 87% coverage: 9:262/291 of query aligns to 10:261/297 of 3g4hA
4gnaA Mouse smp30/gnl-xylitol complex (see paper)
29% identity, 88% coverage: 12:266/291 of query aligns to 13:265/297 of 4gnaA
4gn9A Mouse smp30/gnl-glucose complex (see paper)
29% identity, 88% coverage: 12:266/291 of query aligns to 13:265/297 of 4gn9A
4gn8A Mouse smp30/gnl-1,5-ag complex (see paper)
29% identity, 88% coverage: 12:266/291 of query aligns to 13:265/297 of 4gn8A
Sites not aligning to the query:
4gn7A Mouse smp30/gnl (see paper)
29% identity, 88% coverage: 12:266/291 of query aligns to 13:265/297 of 4gn7A
3e5zA X-ray structure of the putative gluconolactonase in protein family pf08450. Northeast structural genomics consortium target drr130.
28% identity, 67% coverage: 65:260/291 of query aligns to 81:273/290 of 3e5zA
Sites not aligning to the query:
>PfGW456L13_2118 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2118
MTWSVVTGHRARLGEGPFWDAPTQALYWVDIAGKQALRLIGANVQIWQMPEHVSAFIPCE
SGDALVALSSGVYRLDLDSPGLAPRLTLFCVADPQPGNRPNEARCDAQGRLWLGTMQNNI
GANGEDLPIVHRSGGLFRIDRAGRVAPLLRNLGIPNTLLWSDDATSVYFGDSLDGTLYRH
FIRTDGALDAPQVWFGPHERGVPDGSAMDAEGFIWNARWDGNCLLRLSLDGKVDRIIELP
VSRPTSCVFGGSDLKTLYITSAASPLGHPLDGAVLSIAVDVPGKHCTRFAG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory