SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PfGW456L13_303 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_303 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
37% identity, 83% coverage: 5:95/110 of query aligns to 114:200/200 of 6j2lA

query
sites
6j2lA
L
 
L
T
 
Y
R
 
Q
L
 
L
A
 
E
E
 
Q
V
 
L
L
 
L
E
 
A
E
 
E
R
 
R
K
 
K
G
 
Y
A
 
A
A
 
D
A
 
P
D
 
E
S
 
T
S
 
S
Y
 
Y
V
 
T
A
 
A
S
 
K
L
 
L
Y
 
Y
H
 
A
K
 
S
G
 
G
L
 
T
N
 
K
K
 
R
I
 
I
L
 
A
E
 
Q
K
 
K
V
 
V
G
 
G
E
 
E
E
|
E
S
 
G
V
 
V
E
 
E
T
 
T
I
 
A
I
 
L
A
 
-
A
 
-
K
 
-
D
 
-
A
 
A
A
 
A
V
 
T
S
 
V
G
 
H
D
 
D
C
 
R
S
 
F
D
 
E
V
 
L
I
 
T
Y
 
N
E
|
E
T
 
A
A
 
S
D
|
D
L
 
L
W
 
M
F
 
Y
H
 
H
S
 
L
M
 
L
V
 
V
M
 
L
L
 
L
A
 
Q
Q
 
D
L
 
Q
G
 
D
Q
 
L
H
 
D
P
 
L
Q
 
T
A
 
T
V
 
V
L
 
I
D
 
E
E
 
N
L
 
L
D
 
H
R
 
K
R
 
R

Sites not aligning to the query:

Query Sequence

>PfGW456L13_303 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_303
MSDTLTRLAEVLEERKGAAADSSYVASLYHKGLNKILEKVGEESVETIIAAKDAAVSGDC
SDVIYETADLWFHSMVMLAQLGQHPQAVLDELDRRFGLSGHAEKASRPSA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory