Comparing PfGW456L13_3041 Various polyols ABC transporter, permease component 1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 4 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
28% identity, 96% coverage: 5:292/299 of query aligns to 2:280/285 of 7cagA
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
28% identity, 75% coverage: 49:273/299 of query aligns to 251:479/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
28% identity, 75% coverage: 49:273/299 of query aligns to 236:464/490 of 4ki0F
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
29% identity, 88% coverage: 10:273/299 of query aligns to 27:288/313 of P94529
>PfGW456L13_3041 Various polyols ABC transporter, permease component 1
MDIAQPQRKSRVANPGWFLVSPSVALLLLWMIVPLGMTVYFSTIRYNLLNPGENEFVGLE
NFTYFLTDSGFLPGATNTLLLVGSVLLISVVFGVLISALLEASEFFGRGIVRVMLISPFF
IMPTVGALIWKNLIFHPVSGILAYVWKLFGAQPVDWLAHYPLLSIIIIVSWQWLPFAILI
LMTAMQSLDQEQKEAARLDGAGPIAIFWHLTLPHLARPIAVVVMIETIFLLSVFAEIFTT
TNGGPGYASTNLAYLIYNQALVQFDVGMASAGGLIAVVIANIAAIILVRMIGKNLTDKA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory