SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PfGW456L13_3114 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3114 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3oa4A Crystal structure of hypothetical protein bh1468 from bacillus halodurans c-125
37% identity, 44% coverage: 36:98/144 of query aligns to 41:101/138 of 3oa4A

query
sites
3oa4A
L
 
V
K
 
K
V
x
I
C
 
A
F
 
F
A
 
L
Q
 
E
S
 
I
G
 
G
N
 
E
M
 
S
V
 
K
W
 
I
E
|
E
L
 
L
M
 
L
E
 
E
P
 
P
V
 
L
S
 
S
G
 
E
P
 
E
T
 
S
I
 
P
F
 
I
A
 
A
D
 
K
F
 
F
L
 
I
E
 
Q
K
 
K
H
 
R
G
 
G
E
 
E
G
 
G
I
 
I
Q
 
H
H
|
H
V
 
I
A
 
A
Y
 
I
D
 
G
C
 
V
N
 
K
N
 
S
I
 
I
P
 
-
F
 
-
E
 
E
D
 
E
R
 
R
I
 
I
T
 
Q
E
 
E
L
 
V
T
 
K
R
 
E
R
 
N
G
 
G
F
 
V
K
 
Q
C
 
M
V
 
I

Sites not aligning to the query:

Query Sequence

>PfGW456L13_3114 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3114
MDGLLKLGIGPWRVYTFSPENTENQTYHGEPAEFVLKVCFAQSGNMVWELMEPVSGPTIF
ADFLEKHGEGIQHVAYDCNNIPFEDRITELTRRGFKCVQSGSWMGVNHFAFFGTEADTTT
VFETYAFPSDWDYPEPEAWYPAQA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory