Comparing PfGW456L13_3370 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3370 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
G7JT50 Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
49% identity, 97% coverage: 5:366/374 of query aligns to 4:374/374 of G7JT50
3h7cX Crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
48% identity, 97% coverage: 8:368/374 of query aligns to 7:369/369 of 3h7cX
Q8GWW7 Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
47% identity, 97% coverage: 8:369/374 of query aligns to 7:377/383 of Q8GWW7
6nicD Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide (see paper)
49% identity, 95% coverage: 13:366/374 of query aligns to 2:360/360 of 6nicD
Q837U5 Putative agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Enterococcus faecalis (strain ATCC 700802 / V583) (see paper)
48% identity, 96% coverage: 3:360/374 of query aligns to 4:359/365 of Q837U5
6b2wA C. Jejuni c315s agmatine deiminase with substrate bound (see paper)
26% identity, 88% coverage: 28:356/374 of query aligns to 24:321/333 of 6b2wA
Sites not aligning to the query:
>PfGW456L13_3370 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3370
MARLLDTTPKQDGFRLPGEFEAKSGCWLGWPERTDVWRNGAKPAQKVWVQIVTAISMSEP
VTVCASAAQFATARRQLPPQVRVVEMTCNDTWFRDSGPCFVVNDQRGEVRGVDFEFNAYG
GLDGGLYYPWDKDDQIAGKILEIERFDRYRAPLIAELGGIQSDGQGSILTTEQCLLNRNR
NQHLGKDEVTRRLTDYLGAEQVIWLPRGCKFDETDGHVDDLACFVRPGEVVLQWTDNRDD
PQWEIYQEAYDILRSTRDSRGRELIVHKLPQPDVLEWTAEEAEGLDRQDSTHTRQAGTKI
CASYINYYAGNSSIVVPLFGDRNDKVALATLAELFPQHSIVGIENSREILLGGGNVACIT
MPQYAVTTSNKKGA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory