Comparing PfGW456L13_3478 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3478 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
34% identity, 91% coverage: 34:496/510 of query aligns to 32:447/460 of 6u7lA
>PfGW456L13_3478 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3478
MTSREISPVIRLDPADNVVVARVEIPTGTAITNESLTTLQDVPLGHKIAARMIEKGQPVL
KYNTVIGYASEDLPPGTWMHSHNIEFGETARDYRYGLDYVPTDLLPADKRATFQGIIRED
GRVATRNYLGIFVVGNCGATVARKIANHFDEERLAAFPNIDGVVPFVHEIGCGMEMTGEP
MNLLRRTIGGHIKHANTAGGLLIALGCERNNIYGFIEQEQLVLGDMLKSLVIQDVGGVKT
AVDQGIKMIQAMLPQANAVQRETVSAEHLIIGMQCGGSDGFSGLSANPALGAAVDILVRH
GGTAILSETSEIFGVEHTLTARAATPEVGRKLIDRIDWWLEYNKGRDTQINGRVSPGNNA
GGLANVLEKSLGGAKKGGNAPLMDVYEYAYPVTTHGLVFMDTPGYDPVSATGQIAGGANM
IAFTTGRGSCFGSVPAPTFKLASNSPMFNRMSDDMDINCGQIIDGDKTIQQMGQEIFERL
LTHASGDKTKSELNGLGEDEFCPWQIGVLA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory