Comparing PfGW456L13_3648 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3648 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
P00926 D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Escherichia coli (strain K12) (see paper)
67% identity, 97% coverage: 7:444/450 of query aligns to 6:442/442 of P00926
3ss7X Crystal structure of holo d-serine dehydratase from escherichia coli at 1.55 a resolution (see paper)
67% identity, 97% coverage: 7:444/450 of query aligns to 1:437/437 of 3ss7X
3r0xA Crystal structure of selenomethionine incorporated apo d-serine deaminase from salmonella tyhimurium (see paper)
66% identity, 97% coverage: 5:442/450 of query aligns to 2:438/438 of 3r0xA
>PfGW456L13_3648 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3648
MILGKTLESWYASYPLIRDLVALQETTWFNPAVAPVAESIGDVGLTAADVADASARLTRF
ASYLRRAFPETECSGGIIESDILPVPHLQQLLGERYGQALQGALWLKRDSHLPISGSIKA
RGGIYEVLKHAEDLALAANLLTLDDDYAVLDSDKARAFFGQYKIAVGSTGNLGMSIGIMG
AALGFQVTVHMSADARQWKKDKLRSHGVTVIEYSSDYSVAVSQGRQQAESDPACHFVDDE
NSVSLFLGYSVAAERLKKQLAAADITVDAQHPLFVYLPCGVGGAPGGVAFGLKLAFGDAV
HCIFAEPTHSPCMMLGVYSGLHDEVSVQDFGIDNVTAADGLAVGRASGFVGKAMQRLLDG
FYTVSDEEMYSLLALMERSEGVRLEPSALAGVPGIARVQADQQGYLARARLDRQAMVQAT
HLVWATGGNMVPCDEMEAYLAKGRELLAKG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory