Comparing PfGW456L13_377 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_377 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3tqlA Structure of the amino acid abc transporter, periplasmic amino acid- binding protein from coxiella burnetii. (see paper)
40% identity, 89% coverage: 24:244/249 of query aligns to 2:225/225 of 3tqlA
P02911 Lysine/arginine/ornithine-binding periplasmic protein; LAO-binding protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 4 papers)
37% identity, 98% coverage: 5:249/249 of query aligns to 2:258/260 of P02911
1lstA Three-dimensional structures of the periplasmic lysine-, arginine-, ornithine-binding protein with and without a ligand (see paper)
39% identity, 92% coverage: 21:249/249 of query aligns to 1:236/238 of 1lstA
1lahE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
39% identity, 92% coverage: 21:249/249 of query aligns to 1:236/238 of 1lahE
1lagE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
39% identity, 92% coverage: 21:249/249 of query aligns to 1:236/238 of 1lagE
1lafE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
39% identity, 92% coverage: 21:249/249 of query aligns to 1:236/238 of 1lafE
5owfA Structure of a lao-binding protein mutant with glutamine (see paper)
39% identity, 91% coverage: 24:249/249 of query aligns to 1:233/235 of 5owfA
1hslA Refined 1.89 angstroms structure of the histidine-binding protein complexed with histidine and its relationship with many other active transport(slash)chemosensory receptors (see paper)
38% identity, 92% coverage: 21:249/249 of query aligns to 1:236/238 of 1hslA
P02910 Histidine-binding periplasmic protein; HBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
38% identity, 92% coverage: 22:249/249 of query aligns to 24:258/260 of P02910
Sites not aligning to the query:
P0AEU0 Histidine-binding periplasmic protein; HBP from Escherichia coli (strain K12) (see 3 papers)
37% identity, 92% coverage: 22:249/249 of query aligns to 24:258/260 of P0AEU0
Sites not aligning to the query:
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
37% identity, 90% coverage: 22:244/249 of query aligns to 2:225/226 of 4zv1A
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
37% identity, 90% coverage: 22:244/249 of query aligns to 2:223/225 of 4zv2A
2y7iA Structural basis for high arginine specificity in salmonella typhimurium periplasmic binding protein stm4351. (see paper)
34% identity, 91% coverage: 19:244/249 of query aligns to 1:227/228 of 2y7iA
8hqrA Crystal structure of the arginine-/lysine-binding protein sar11_1210 from 'candidatus pelagibacter ubique' htcc1062 bound to arginine
38% identity, 64% coverage: 20:179/249 of query aligns to 4:185/267 of 8hqrA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
33% identity, 88% coverage: 26:244/249 of query aligns to 12:227/229 of 6svfA
5orgA Structure of the periplasmic binding protein (pbp) occj from a. Tumefaciens b6 in complex with octopine. (see paper)
29% identity, 89% coverage: 24:244/249 of query aligns to 4:250/257 of 5orgA
3i6vA Crystal structure of a periplasmic his/glu/gln/arg/opine family- binding protein from silicibacter pomeroyi in complex with lysine
33% identity, 88% coverage: 25:244/249 of query aligns to 1:211/218 of 3i6vA
3vvfA Crystal structure of ttc0807 complexed with arginine (see paper)
32% identity, 88% coverage: 26:244/249 of query aligns to 19:234/241 of 3vvfA
3vveA Crystal structure of ttc0807 complexed with lysine (see paper)
32% identity, 88% coverage: 26:244/249 of query aligns to 19:234/241 of 3vveA
3vvdA Crystal structure of ttc0807 complexed with ornithine (see paper)
32% identity, 88% coverage: 26:244/249 of query aligns to 19:234/241 of 3vvdA
>PfGW456L13_377 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_377
MQNYKKVFLAAAVTLAFSAGAMAETLKMGIEAAYPPFNNKDASGNVVGFDKEIGDALCAK
MKVECTVVTSDWDGIIPALNAKKFDFLISSMSITDERKQAVDFTDPYYSNKLQFIAKKDI
DFKTDKAALKGKIIGAQRATLAGTFLEDNYGDDITIKLYDTQENAYLDLTSGRLDGILAD
KYVNYEWLKSDAGRSYEFKGDPVEESDKIGIAVRKKDPIREKLNTALKEIVADGTYKKIN
DKYFPFSIY
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory