Comparing PfGW456L13_3912 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3912 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
39% identity, 88% coverage: 20:288/305 of query aligns to 1:268/287 of 5dteB
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
34% identity, 88% coverage: 21:288/305 of query aligns to 1:257/271 of 1dbpA
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
34% identity, 92% coverage: 24:305/305 of query aligns to 3:270/274 of 2ioyA
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
34% identity, 87% coverage: 24:289/305 of query aligns to 5:258/270 of 4zjpA
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
33% identity, 87% coverage: 25:288/305 of query aligns to 5:269/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
33% identity, 87% coverage: 25:288/305 of query aligns to 5:269/288 of 1gudA
Sites not aligning to the query:
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
28% identity, 93% coverage: 21:305/305 of query aligns to 1:280/292 of 2fn8A
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
33% identity, 87% coverage: 25:288/305 of query aligns to 5:269/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
33% identity, 87% coverage: 25:288/305 of query aligns to 5:269/288 of 8wl9A
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
28% identity, 93% coverage: 23:305/305 of query aligns to 2:277/290 of 4wutA
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
28% identity, 80% coverage: 61:304/305 of query aligns to 37:285/313 of 2h3hA
Sites not aligning to the query:
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
28% identity, 80% coverage: 61:304/305 of query aligns to 37:285/305 of 3c6qC
Sites not aligning to the query:
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
29% identity, 86% coverage: 24:284/305 of query aligns to 5:256/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
29% identity, 86% coverage: 24:284/305 of query aligns to 5:256/287 of 4ry0A
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
27% identity, 85% coverage: 23:281/305 of query aligns to 10:260/296 of 4irxA
4rxtA Crystal structure of carbohydrate transporter solute binding protein arad_9553 from agrobacterium radiobacter, target efi-511541, in complex with d-arabinose
29% identity, 92% coverage: 24:305/305 of query aligns to 7:282/295 of 4rxtA
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
29% identity, 93% coverage: 23:305/305 of query aligns to 10:276/284 of 7e7mC
2vk2A Crystal structure of a galactofuranose binding protein (see paper)
32% identity, 64% coverage: 70:265/305 of query aligns to 46:245/296 of 2vk2A
Sites not aligning to the query:
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
25% identity, 89% coverage: 18:288/305 of query aligns to 3:265/283 of 6gt9A
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
32% identity, 64% coverage: 70:265/305 of query aligns to 68:267/318 of P39325
Sites not aligning to the query:
>PfGW456L13_3912 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3912
MLAAASAALPVSSAFAETTEKPKVALVMKSLANEFFLTMEDGAKAYQKDHSGEFDLISNG
IKDETDTAGQTRIVEQMILAKVNALVIAPADSKAMVPVIKKAIDAGITVINIDNQLDPAV
VKSKNINVPFVGPDNRKGARLVGDYLAKQLKAGDEVGIIEGVSTTTNAQQRTAGFKDAME
AAQIKVVSLQSGDWEIDKGNKVAASILSEYPQTKALLAGNDSMAVGAVSAVRAAGKAGKV
QVVGYDNINAIQPMLKDGRVLATADQFAAKQAVFGIETALKILKGEKVDGGANGVIETPV
ELVTK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory