Comparing PfGW456L13_4110 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4110 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
54% identity, 96% coverage: 3:159/163 of query aligns to 1:157/158 of 2yjvC
1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
43% identity, 91% coverage: 6:154/163 of query aligns to 7:155/156 of 1nxjA
>PfGW456L13_4110 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4110
MNHYITPDLCDAYPELVQVLEPMFSNFGGRDSFGGEIVTIKCFEDNSRVKEQVELKGNGK
VLVVDGGGSLRHALLGDMLAEKAAKNGWEGLVIYGCIRDVDIIAQTDLGVQALASHPRKS
DRRGLGDLNVVVTFAGVTFRPGEYIYADNNGVIISPSPLKMPE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory