Comparing PfGW456L13_444 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_444 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
46% identity, 83% coverage: 39:260/266 of query aligns to 3:223/225 of 4zv2A
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
46% identity, 83% coverage: 39:260/266 of query aligns to 3:225/226 of 4zv1A
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
45% identity, 86% coverage: 33:260/266 of query aligns to 3:228/229 of 5t0wA
2ylnA Crystal structure of the l-cystine solute receptor of neisseria gonorrhoeae in the closed conformation (see paper)
39% identity, 90% coverage: 27:265/266 of query aligns to 1:238/240 of 2ylnA
3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec) (see paper)
37% identity, 87% coverage: 33:264/266 of query aligns to 6:234/237 of 3vv5A
3vvfA Crystal structure of ttc0807 complexed with arginine (see paper)
37% identity, 87% coverage: 33:264/266 of query aligns to 10:238/241 of 3vvfA
3vveA Crystal structure of ttc0807 complexed with lysine (see paper)
37% identity, 87% coverage: 33:264/266 of query aligns to 10:238/241 of 3vveA
3vvdA Crystal structure of ttc0807 complexed with ornithine (see paper)
37% identity, 87% coverage: 33:264/266 of query aligns to 10:238/241 of 3vvdA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
34% identity, 86% coverage: 33:261/266 of query aligns to 3:228/229 of 6svfA
8eyzA Engineered glutamine binding protein bound to gln and a cobaloxime ligand (see paper)
35% identity, 83% coverage: 44:263/266 of query aligns to 7:224/226 of 8eyzA
3k4uE Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
33% identity, 83% coverage: 39:260/266 of query aligns to 3:226/234 of 3k4uE
4g4pA Crystal structure of glutamine-binding protein from enterococcus faecalis at 1.5 a (see paper)
34% identity, 82% coverage: 44:261/266 of query aligns to 18:235/235 of 4g4pA
5otcA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with noroctopinic acid. (see paper)
32% identity, 84% coverage: 42:265/266 of query aligns to 4:253/256 of 5otcA
5ovzA High resolution structure of the pbp noct in complex with nopaline (see paper)
32% identity, 84% coverage: 42:265/266 of query aligns to 5:254/259 of 5ovzA
5otaA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with octopinic acid (see paper)
32% identity, 84% coverage: 42:265/266 of query aligns to 4:253/254 of 5otaA
5ot9A Structure of the periplasmic binding protein (pbp) noct from a.Tumefaciens c58 in complex with histopine. (see paper)
32% identity, 84% coverage: 42:265/266 of query aligns to 4:253/254 of 5ot9A
4powA Structure of the pbp noct in complex with pyronopaline (see paper)
32% identity, 84% coverage: 42:265/266 of query aligns to 4:253/254 of 4powA
2y7iA Structural basis for high arginine specificity in salmonella typhimurium periplasmic binding protein stm4351. (see paper)
30% identity, 83% coverage: 41:261/266 of query aligns to 7:228/228 of 2y7iA
5itoA Structure of the periplasmic binding protein m117n-noct from a. Tumefaciens in complex with octopine (see paper)
32% identity, 84% coverage: 42:265/266 of query aligns to 5:254/255 of 5itoA
4i62A 1.05 angstrom crystal structure of an amino acid abc transporter substrate-binding protein abpa from streptococcus pneumoniae canada mdr_19a bound to l-arginine
32% identity, 87% coverage: 33:264/266 of query aligns to 1:235/237 of 4i62A
>PfGW456L13_444 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_444
MNFSTLRRNLLVGSLGLALSAGLIGQAVAGEQLQQIKDKGVINVGLEGTYPPFSFVDADG
KLAGFEVEFSEALAKELGVKVKLQPTKWDGILAALESKRLDAVINQVTISEERKKKYDFS
EPYTVSGIQALVLTKKVAELNIKSAADLSGKKVGVGLGTNYEQWVKENVPKADVRTYEDD
PTKFQDLRVGRIDAILIDRLAALEYAKKAKDTTAAGDAFSRQEAGIALRKGEPELLAAVN
KAIDKLRADGTLKKLSEKYFSADVTQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory