Comparing PfGW456L13_446 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_446 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
57% identity, 98% coverage: 1:246/251 of query aligns to 1:240/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
56% identity, 97% coverage: 1:244/251 of query aligns to 3:240/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
56% identity, 97% coverage: 1:244/251 of query aligns to 3:240/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
56% identity, 97% coverage: 1:244/251 of query aligns to 3:240/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
56% identity, 97% coverage: 1:244/251 of query aligns to 3:240/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
54% identity, 98% coverage: 1:247/251 of query aligns to 2:241/241 of 4u00A
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
53% identity, 94% coverage: 7:242/251 of query aligns to 8:249/258 of 1b0uA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
53% identity, 94% coverage: 7:242/251 of query aligns to 12:253/258 of P02915
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 98% coverage: 1:247/251 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
37% identity, 98% coverage: 1:247/251 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
37% identity, 98% coverage: 1:247/251 of query aligns to 2:247/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
37% identity, 98% coverage: 1:247/251 of query aligns to 2:247/344 of 6cvlD
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
40% identity, 91% coverage: 21:248/251 of query aligns to 46:269/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
40% identity, 91% coverage: 21:248/251 of query aligns to 46:269/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
40% identity, 87% coverage: 21:239/251 of query aligns to 46:260/260 of 7ahdC
Sites not aligning to the query:
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
40% identity, 87% coverage: 1:218/251 of query aligns to 1:221/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
40% identity, 87% coverage: 1:218/251 of query aligns to 1:221/230 of 1l2tA
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
42% identity, 86% coverage: 5:221/251 of query aligns to 7:217/223 of 2pclA
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
45% identity, 74% coverage: 17:201/251 of query aligns to 23:202/330 of P9WQK5
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
42% identity, 82% coverage: 16:222/251 of query aligns to 23:223/650 of 5ws4A
>PfGW456L13_446 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_446
MIVVEKLTKQFKGQIVLNGIDLEVKEGEVVAIIGPSGSGKTTFLRCLNFLEEPTSGRIKV
GDIEVDTSRPLNQQQSLVRRLRQHVGFVFQNFNLFPHRTALENVIEGPIVVKKTPHADAV
ALGKKLLAKVGLAGKEDAYPRRLSGGQQQRVAIARALAMEPEVILFDEPTSALDPELVGE
VLATIRGLAEEKRTMVIVTHEMGFARDVANRVVFFDKGVIVEQGEAKALFANPKEERTKQ
FLSKFLNNAHN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory