Comparing PfGW456L13_4546 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4546 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
P53322 High-affinity nicotinic acid transporter; Nicotinic acid permease from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
23% identity, 72% coverage: 12:332/443 of query aligns to 74:396/534 of P53322
6e9nA E. Coli d-galactonate:proton symporter in the inward open form (see paper)
24% identity, 88% coverage: 34:424/443 of query aligns to 14:395/409 of 6e9nA
P0AA76 D-galactonate transporter; D-galactonate/H(+) symporter from Escherichia coli (strain K12) (see paper)
24% identity, 88% coverage: 34:424/443 of query aligns to 25:414/430 of P0AA76
6e9oA E. Coli d-galactonate:proton symporter mutant e133q in the outward substrate-bound form (see paper)
24% identity, 88% coverage: 34:424/443 of query aligns to 17:379/393 of 6e9oA
Q5EXK5 3-hydroxybenzoate transporter MhbT from Klebsiella oxytoca (see paper)
24% identity, 77% coverage: 90:430/443 of query aligns to 83:428/452 of Q5EXK5
Sites not aligning to the query:
>PfGW456L13_4546 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4546
MSLNALEAGASPAVSHDEEKALVSKVAWRLMPLIMVCYLFAFFDRINISFAKFQLQADLS
LSDTAYGLGAGLFVVGYVIFEVPSNMMLYKVGARRWIARIMMSWGLATAAMVFVNSEWQF
YVLRFVIGAMEAGFAPGVLYYLTLWFPQHYRGRITSMLFLASAFAGLVGAPFSGLVLQHL
DGVLQMRGWHWLFLLGGVPCIGLGLLVLTLLKDRIEDAHWLTPSEKTLLASRIAQHEPHK
SGGSLLAALRIPGFLTLGLIYFLIQVASYGLNFWAPQLIRSAGTESPVMIGLLTAIPYIC
GAISMVVIGRLSDASGERRKFVAGLVAVGAVGFFCAGIFASHTTFLIVALGLLGAGIIAS
IPSFWTLPPKLLAGAGAGAAGGIAVINTLGQFGGIVSPVMVGRIKDLTGSTTPALYVIGV
CALIAVALLLWGLPQKLRTLDKF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory