Comparing PfGW456L13_5058 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5058 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
37% identity, 98% coverage: 1:320/326 of query aligns to 1:321/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
36% identity, 98% coverage: 2:320/326 of query aligns to 1:310/310 of 4fwiB
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
30% identity, 96% coverage: 4:317/326 of query aligns to 3:323/330 of P0AAH4
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 76% coverage: 16:263/326 of query aligns to 7:248/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 76% coverage: 16:263/326 of query aligns to 8:249/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 76% coverage: 16:263/326 of query aligns to 8:249/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 76% coverage: 16:263/326 of query aligns to 8:249/344 of 3tuiC
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
34% identity, 71% coverage: 24:256/326 of query aligns to 13:246/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
34% identity, 71% coverage: 24:256/326 of query aligns to 13:246/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
34% identity, 71% coverage: 24:256/326 of query aligns to 13:246/250 of 7z16I
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 72% coverage: 20:255/326 of query aligns to 7:237/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
34% identity, 72% coverage: 20:255/326 of query aligns to 9:239/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
34% identity, 72% coverage: 20:255/326 of query aligns to 9:239/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
34% identity, 72% coverage: 20:255/326 of query aligns to 9:239/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
34% identity, 72% coverage: 20:255/326 of query aligns to 9:239/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 73% coverage: 18:254/326 of query aligns to 6:236/241 of 4u00A
P9WQI3 Trehalose import ATP-binding protein SugC; MtbSugC; Nucleotide-binding domain of SugABC transporter; NBD of SugABC transporter; SugABC transporter ATPase SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
35% identity, 76% coverage: 16:264/326 of query aligns to 9:244/393 of P9WQI3
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
32% identity, 77% coverage: 20:269/326 of query aligns to 33:286/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
32% identity, 77% coverage: 20:269/326 of query aligns to 33:286/382 of 7aheC
Sites not aligning to the query:
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
33% identity, 73% coverage: 20:258/326 of query aligns to 12:247/375 of 2d62A
>PfGW456L13_5058 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5058
MAVVLTARDLTRHYEVSRGLFKGHATVRALNGVSFELEAGKTLAVVGESGCGKSTLARAL
TLIEEPSSGSLKIAGQEVAGADKAQRKQLRKDVQMVFQSPYASLNPRQKVGDQLAEPLLI
NTNLSAAERREKVQAMMKQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVADEP
TSALDVSIQAQVLNLFMDLQQEFNTAYVFISHNLAVVRHVADHVMVMYLGRPVEMGTKED
IYSRPLHPYTQALLSATPAIHPDPDKPKIKIVGELPNPLNPPSGCAFHKRCPYATERCST
EEPALRLIAGRQVACHYAEQFLDGAA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory