Comparing PfGW456L13_5073 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5073 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P20966 PTS system fructose-specific EIIB'BC component; EIIB'BC-Fru; EC 2.7.1.202 from Escherichia coli (strain K12) (see paper)
59% identity, 98% coverage: 1:569/579 of query aligns to 1:556/563 of P20966
O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
46% identity, 77% coverage: 121:566/579 of query aligns to 2:459/650 of O31645
>PfGW456L13_5073 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5073
MKLAIVTACPNGMVTSVLCARLLDAAAQRQGWSTSVEVTDAAHPEKQLSAATLDAAEWVL
LVTSAPVEMSRFVGKRVFQSTPAQALQDVEAVLRRGAQDAQVYAAEEAAVEPVAVVQNAP
RLVAVTACPTGVAHTFMAAEALQQAAKRLGYELQVETQGSVGARNPLSAQAIAEADVVLL
AADIEVATERFAGKKIYRCGTGIALKQAEATLKKALAEGQQESASSAAKTTAKQEKTGVY
KHLLTGVSFMLPMVVAGGLMIALSFVFGITAFKEEGTLAAALMQIGGDSAFKLMVPLLAG
YIAYSIADRPGLAPGMIGGLLASTLGAGFIGGIIAGFLAGYAARAINRYARLPQSLEALK
PILIIPLLASLFTGLVMIYVVGKPVAGMLAGLTNFLDSMGTTNAILLGVLLGGMMCVDLG
GPINKAAYAFSVGLLASQSYAPMAATMAAGMVPPIGLGIATFIARRKFAQTEREAGKAAL
VLGLCFISEGAIPFAAKDPLRVIPASIAGGALTGALSMYFGCKLMAPHGGLFVLAIPNAI
NHALLYLLAIVAGSLLTAVAYALVKRPEVVELAVEPVTA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory