Comparing PfGW456L13_904 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_904 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 10 hits to proteins with known functional sites (download)
4lhdA Crystal structure of synechocystis sp. Pcc 6803 glycine decarboxylase (p-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop (see paper)
60% identity, 98% coverage: 9:950/957 of query aligns to 12:949/952 of 4lhdA
Sites not aligning to the query:
Q94B78 Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
55% identity, 99% coverage: 6:955/957 of query aligns to 69:1029/1037 of Q94B78
6i33A Crystal structure of human glycine decarboxylase (p-protein)
56% identity, 98% coverage: 16:953/957 of query aligns to 15:950/950 of 6i33A
6i35A Crystal structure of human glycine decarboxylase (p-protein) bound with pyridoxyl-glycine-5'-monophosphate
55% identity, 98% coverage: 16:953/957 of query aligns to 15:953/953 of 6i35A
6i34B Crystal structure of neanderthal glycine decarboxylase (p-protein)
56% identity, 98% coverage: 16:952/957 of query aligns to 13:954/954 of 6i34B
6i33B Crystal structure of human glycine decarboxylase (p-protein)
55% identity, 98% coverage: 16:952/957 of query aligns to 13:925/925 of 6i33B
P15505 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus (Chicken) (see paper)
53% identity, 98% coverage: 16:956/957 of query aligns to 53:992/1004 of P15505
1wyuB Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in holo form (see paper)
41% identity, 41% coverage: 484:873/957 of query aligns to 46:433/473 of 1wyuB
1wyvA Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in inhibitor-bound form (see paper)
36% identity, 38% coverage: 27:393/957 of query aligns to 10:380/437 of 1wyvA
1wyuA Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in holo form (see paper)
36% identity, 38% coverage: 27:393/957 of query aligns to 10:380/437 of 1wyuA
>PfGW456L13_904 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_904
MSQLPSLSQLRDPNAFLRRHLGPDAAEQQAMLDSLGLGSRVDLIEQTVPPGIRLNRPLDL
PPALDEEAALAKLRGYAEQNQVWTSLIGMGYHGTLTPAVILRNVLENPGWYTAYTPYQPE
IAQGRLEALLNFQQLTIDLTGLELANASLLDEATAAAEAMALAKRVAKSKSNLFFVDENC
HPQTISVVQTRAEGFGFDLIVDTVDNLKRHQVFGALLQYPDTHGEIHDLRPLIDHLHAQQ
ALACVATDLLSLLLLTPPGELGADVVFGSSQRFGVPMGYGGPHAAFFASRDEYKRAIPGR
IIGVSKDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIASFYAVYHGPEGLKRI
AQRVHRLTCILATGLERNGIVRVNRHFFDTLTLEVGGTQTAIIESARAAQINLRILGRGQ
LGLSLDETCDEGTVAKLFDVFLGADHGLSIDDLDAEVLPGGIPQGLARTSPYLRHPVFSA
HHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPQFANLHPFVPKEQ
AAGYGLMIEELERWLCAITGFDAICMQPNSGAQGEYAGLLAIRKYHESRQQGGRDICLIP
SSAHGTNPASAQMAGMRVVIVECDEAGNVDLDDLKEKAAQAAEKLACLMATYPSTHGVYE
EGISEICEVIHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGM
GPIGVRAHLAPFVANHPVVPIDGPHPQNGAVSAAPWGSASILPISWMYIAMMGPQLADAS
EVAILAANYLARHLSGAFPVLYTGRNERVAHECILDLRPLKALTGITEEDVAKRLMDYGF
HAPTMSFPVPGTLMVEPTESESKAELDRFIGAMLSIRAEINEVQNGNWPAEENPLKGAPH
TLADITGVWERPYSIVQAVTPDAHTKAHKYWPVVNRVDNVYGDRNLFCACVPVDDYR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory