SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Psyr_4741 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

O32583 Sulfur carrier protein ThiS; Thiamine biosynthesis protein ThiS from Escherichia coli (strain K12) (see paper)
35% identity, 100% coverage: 1:66/66 of query aligns to 1:66/66 of O32583

query
sites
O32583
M
 
M
H
 
Q
I
 
I
Q
 
L
L
 
F
N
 
N
G
 
D
E
 
Q
P
 
A
F
 
M
E
 
Q
L
 
C
P
 
A
D
 
A
G
 
G
E
 
Q
T
 
T
V
 
V
A
 
H
A
 
E
L
 
L
L
 
L
T
 
E
R
 
Q
L
 
L
D
 
D
L
 
Q
A
 
R
G
 
Q
R
 
A
R
 
G
V
 
A
A
 
A
V
 
L
E
 
A
L
 
I
N
 
N
L
 
Q
D
 
Q
I
 
I
V
 
V
P
 
P
R
 
R
S
 
E
Q
 
Q
H
 
W
V
 
A
A
 
Q
T
 
H
V
 
I
L
 
V
S
 
Q
E
 
D
G
 
G
D
 
D
Q
 
Q
V
 
I
E
 
L
V
 
L
V
 
F
H
 
Q
A
 
V
I
 
I
G
 
A
G
 
G
G
|
G

Query Sequence

>Psyr_4741
MHIQLNGEPFELPDGETVAALLTRLDLAGRRVAVELNLDIVPRSQHVATVLSEGDQVEVV
HAIGGG

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory