Comparing RR42_RS00275 FitnessBrowser__Cup4G11:RR42_RS00275 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
37% identity, 93% coverage: 16:501/522 of query aligns to 3:439/460 of 6u7lA
>RR42_RS00275 FitnessBrowser__Cup4G11:RR42_RS00275
MTTDPLAANPVQAPRTSHTIRLHPDDDVVIARDQMVAGTPIADEGVTVIGLVPPGHKIAT
RAIANGEAVRRYGQIIGFASQDIRAGQHVHTHNLAMGDFTRDYAFSAEARVVRPAAQPAT
FDGIKRADGGVATRNYIGILTSVNCSATVARAIADHFRRDIHPQALAAYPNVDGVVALTH
GVGCAVDPQGEGLAVLQRTLGGYACHPNFASVLVIGLGCETNQISALLATQGLAHSDRLQ
TFTIQDTGGTTKTIAHGIELIKAMLPKANAVERQPVPAHHLVVGLQCGGSDGYSGISANP
VLGAAVDLLVRNGGTAILSETPEIYGAEHLLTRRAQTPEIGRKLVARIRWWEAYCERHGA
SMDNNPSAGNKAGGLTTVLEKSLGGIAKGGSTNLAEVYEYAQPVRVRGLVFMDTPGYDPI
SATGQVAGGANLICFTTGRGSAYGCAPSPSVKLATNTALWQRQSDDMDLNCGTVLDGSAT
IAELGAALFELMLDTASGKRSRSELHGYGQNEFVPWQLGAIT
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory