Comparing RR42_RS00735 FitnessBrowser__Cup4G11:RR42_RS00735 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 10 hits to proteins with known functional sites (download)
3lzkC The crystal structure of a probably aromatic amino acid degradation protein from sinorhizobium meliloti 1021
57% identity, 99% coverage: 1:323/327 of query aligns to 7:338/343 of 3lzkC
8gstC Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Pyruvate bound-form) (see paper)
27% identity, 50% coverage: 109:273/327 of query aligns to 93:251/290 of 8gstC
Sites not aligning to the query:
8gsrA Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) (see paper)
27% identity, 50% coverage: 109:273/327 of query aligns to 93:251/290 of 8gsrA
8sutA Crystal structure of yisk from bacillus subtilis in complex with reaction product 4-hydroxy-2-oxoglutaric acid (see paper)
25% identity, 71% coverage: 40:271/327 of query aligns to 52:273/303 of 8sutA
8skyB Crystal structure of yisk from bacillus subtilis in complex with oxalate (see paper)
25% identity, 71% coverage: 40:271/327 of query aligns to 51:272/303 of 8skyB
6j5xB Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
27% identity, 58% coverage: 85:273/327 of query aligns to 74:250/280 of 6j5xB
Sites not aligning to the query:
6j5xA Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
27% identity, 58% coverage: 85:273/327 of query aligns to 74:250/280 of 6j5xA
3r6oA Crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7- dioateisomerase from mycobacterium abscessus (see paper)
23% identity, 48% coverage: 110:265/327 of query aligns to 76:226/265 of 3r6oA
4dbhA Crystal structure of cg1458 with inhibitor (see paper)
22% identity, 59% coverage: 73:265/327 of query aligns to 56:239/269 of 4dbhA
6iymA Fumarylacetoacetate hydrolase (eafah) from psychrophilic exiguobacterium antarcticum (see paper)
23% identity, 63% coverage: 64:269/327 of query aligns to 53:244/277 of 6iymA
>RR42_RS00735 FitnessBrowser__Cup4G11:RR42_RS00735
MKLATLKDGSRDGQLVVVSRDLKTAHYVNDVAGKLQTVLDDWNFYAPQLQDVYDALNAGR
ARHPFAFDPRACMAPLPRAYQWADGSAYVNHVELVRRARGAEMPPEFWTDPLMYQGGSDD
MIGPHDDIVCTSEAFGIDFEAEVAVITGDVKMGAKPEQAADAIRLIMLANDVSLRNLIPA
ELGKGFGFFQSKPATAFSPVAVTPDELGEAWRERRVHLPMTVHWNSKKVGAPDCGTDMVF
DFGQLIAHICKTRNVRAGSIVGSGTISNVDRSKGYCCIAEKRMLEIIDGGQPVTGFMKFG
DAVKIEMFDAQGRSVFGAIDQLVSAKG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory