SitesBLAST
Comparing RR42_RS02380 FitnessBrowser__Cup4G11:RR42_RS02380 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
23% identity, 28% coverage: 193:566/1324 of query aligns to 49:358/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R540), T337 (= T543), K348 (= K554)
- binding flavin-adenine dinucleotide: P75 (= P219), Q76 (≠ R220), G77 (= G221), G78 (= G222), N79 (≠ G223), T80 (= T224), G81 (= G225), M82 (≠ Y226), G85 (= G229), S86 (≠ A230), L139 (≠ P292), G140 (≠ T293), A141 (≠ S294), C145 (≠ S298), H146 (≠ C299), G148 (= G301), G149 (= G302), N150 (= N303), A152 (= A305), T153 (≠ M306), A155 (= A308), G156 (= G309), G157 (= G310), E206 (= E407), G207 (= G408), I211 (= I412), I212 (= I413)
Sites not aligning to the query:
- binding 2-oxoglutaric acid: 379, 381, 388, 390, 423
- binding flavin-adenine dinucleotide: 39, 381, 422, 423, 459
- binding zinc ion: 381, 388, 422
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
23% identity, 28% coverage: 193:566/1324 of query aligns to 49:358/466 of 6lpuA
- binding flavin-adenine dinucleotide: P75 (= P219), Q76 (≠ R220), G77 (= G221), G78 (= G222), N79 (≠ G223), T80 (= T224), G81 (= G225), M82 (≠ Y226), G85 (= G229), S86 (≠ A230), L139 (≠ P292), G140 (≠ T293), A141 (≠ S294), C145 (≠ S298), H146 (≠ C299), G148 (= G301), G149 (= G302), N150 (= N303), A152 (= A305), T153 (≠ M306), A155 (= A308), G156 (= G309), G157 (= G310), E206 (= E407), G207 (= G408), I211 (= I412), I212 (= I413)
- binding (2s)-2-hydroxypentanedioic acid: M82 (≠ Y226), R333 (= R540), T337 (= T543), K348 (= K554)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 39, 381, 422, 423, 459
- binding (2s)-2-hydroxypentanedioic acid: 379, 381, 388, 390, 423
- binding zinc ion: 381, 388, 422
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
23% identity, 28% coverage: 193:566/1324 of query aligns to 49:358/466 of 6lpqA
- binding flavin-adenine dinucleotide: P75 (= P219), Q76 (≠ R220), G77 (= G221), G78 (= G222), N79 (≠ G223), T80 (= T224), G81 (= G225), G85 (= G229), S86 (≠ A230), L139 (≠ P292), G140 (≠ T293), A141 (≠ S294), C145 (≠ S298), H146 (≠ C299), G148 (= G301), G149 (= G302), N150 (= N303), A152 (= A305), T153 (≠ M306), A155 (= A308), G156 (= G309), G157 (= G310), E206 (= E407), G207 (= G408), G210 (= G411), I211 (= I412), I212 (= I413)
- binding d-malate: M82 (≠ Y226), R333 (= R540), T337 (= T543), K348 (= K554)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 39, 381, 422, 423, 459
- binding d-malate: 379, 381, 388, 422, 423
- binding zinc ion: 381, 388, 422
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
23% identity, 28% coverage: 193:566/1324 of query aligns to 49:358/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: M82 (≠ Y226), R333 (= R540), T337 (= T543), K348 (= K554)
- binding flavin-adenine dinucleotide: P75 (= P219), Q76 (≠ R220), G77 (= G221), G78 (= G222), N79 (≠ G223), T80 (= T224), G81 (= G225), M82 (≠ Y226), G85 (= G229), S86 (≠ A230), L139 (≠ P292), G140 (≠ T293), A141 (≠ S294), C145 (≠ S298), H146 (≠ C299), G148 (= G301), G149 (= G302), N150 (= N303), A152 (= A305), T153 (≠ M306), A155 (= A308), G156 (= G309), G157 (= G310), E206 (= E407), G207 (= G408), I211 (= I412), I212 (= I413)
Sites not aligning to the query:
- binding (2R)-2-hydroxypentanedioic acid: 379, 381, 388, 390, 422, 423
- binding flavin-adenine dinucleotide: 39, 381, 422, 423, 459
- binding zinc ion: 381, 388, 422
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
23% identity, 28% coverage: 193:566/1324 of query aligns to 50:359/467 of 6lpnB
- binding flavin-adenine dinucleotide: P76 (= P219), Q77 (≠ R220), G78 (= G221), G79 (= G222), N80 (≠ G223), T81 (= T224), G82 (= G225), M83 (≠ Y226), G86 (= G229), S87 (≠ A230), L140 (≠ P292), G141 (≠ T293), A142 (≠ S294), C146 (≠ S298), H147 (≠ C299), G149 (= G301), G150 (= G302), N151 (= N303), A153 (= A305), T154 (≠ M306), A156 (= A308), G157 (= G309), G158 (= G310), E207 (= E407), G208 (= G408), I212 (= I412), I213 (= I413), T338 (= T543)
Sites not aligning to the query:
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
23% identity, 28% coverage: 193:566/1324 of query aligns to 102:411/521 of Q8N465
- S109 (≠ E200) to W: in D2HGA1; unknown pathological significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ I218) to K: in D2HGA1; unknown pathological significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G222) to V: in D2HGA1; unknown pathological significance; complete loss of catalytic activity
- I147 (≠ V239) to S: in D2HGA1; severe phenotype; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (≠ L245) to T: in D2HGA1; unknown pathological significance; significant loss of catalytic activity; to V: in D2HGA1; unknown pathological significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ V272) to Y: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (≠ A289) to L: in D2HGA1; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (= A305) to V: in D2HGA1; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (≠ P331) to V: in D2HGA1; unknown pathological significance; significant loss of catalytic activity
- G233 (= G333) to S: in D2HGA1; unknown pathological significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ S529) to Y: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R540) binding ; binding ; binding ; mutation to A: Loss of catalytic activity.
- T390 (= T543) binding ; binding ; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ A552) to M: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (= K554) binding ; binding ; mutation to A: Loss of catalytic activity.
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; unknown pathological significance)
- 400:521 natural variant: Missing (in D2HGA1; unknown pathological significance; complete loss of catalytic activity)
- 419 R → H: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- 426 A → T: in D2HGA1; unknown pathological significance; no effect on catalytic activity; dbSNP:rs146578303
- 434 binding ; H→A: Loss of catalytic activity.
- 436 G → V: slight reduction in catalytic activity
- 439 N → D: in D2HGA1; mild phenotype; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs121434362
- 441 binding ; H→A: Loss of catalytic activity.
- 443 binding ; N→A: Significantly reduced catalytic activity.
- 444 V → A: in D2HGA1; severe phenotype; unknown pathological significance; significant reduction in catalytic activity; dbSNP:rs121434360
- 446 A → V: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- 475 binding ; E→A: Loss of catalytic activity.
- 476 binding ; binding ; binding ; H→A: Loss of catalytic activity.
- 477 G → R: in D2HGA1; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
23% identity, 19% coverage: 172:429/1324 of query aligns to 22:222/465 of 3pm9A
- active site: A149 (= A308), L159 (≠ T318)
- binding flavin-adenine dinucleotide: P69 (= P219), Q70 (≠ R220), G71 (= G221), G72 (= G222), N73 (≠ G223), T74 (= T224), G75 (= G225), L76 (≠ Y226), G79 (= G229), Q80 (≠ A230), L91 (≠ T242), L133 (≠ P292), G134 (≠ T293), A135 (≠ S294), C139 (≠ S298), T140 (≠ C299), G142 (= G301), G143 (= G302), N144 (= N303), S146 (≠ A305), T147 (≠ M306), A149 (= A308), G150 (= G309), E200 (= E407), G201 (= G408), G204 (= G411), I205 (= I412), I206 (= I413)
Sites not aligning to the query:
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
27% identity, 11% coverage: 185:333/1324 of query aligns to 59:201/496 of P39976
Sites not aligning to the query:
- 17 modified: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
P9WIT1 Uncharacterized FAD-linked oxidoreductase Rv2280; EC 1.-.-.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
29% identity, 12% coverage: 189:348/1324 of query aligns to 38:184/459 of P9WIT1
Sites not aligning to the query:
- 354 modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)
7qh2C Cryo-em structure of ldh-etfab complex from acetobacterium woodii (see paper)
26% identity, 11% coverage: 190:338/1324 of query aligns to 44:182/467 of 7qh2C
- binding flavin-adenine dinucleotide: V73 (≠ P219), R74 (= R220), G75 (= G221), S76 (≠ G222), G77 (= G223), T78 (= T224), T78 (= T224), G79 (= G225), L80 (≠ Y226), A83 (≠ G229), C84 (≠ A230), P137 (= P292), G138 (≠ T293), E139 (≠ S294), E139 (≠ S294), A142 (= A297), T143 (≠ S298), A145 (≠ G301), G146 (= G302), N147 (= N303), S149 (≠ A305), T150 (≠ M306), A152 (= A308), G153 (= G309)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 32, 37, 37, 203, 204, 207, 208, 209, 332, 422, 423, 459
- binding fe (iii) ion: 377, 384, 422
2uuvC Alkyldihydroxyacetonephosphate synthase in p1 (see paper)
23% identity, 13% coverage: 167:334/1324 of query aligns to 85:253/491 of 2uuvC
- binding flavin-adenine dinucleotide: K101 (vs. gap), P146 (= P219), M147 (≠ R220), G148 (= G221), G149 (= G222), G150 (= G223), S151 (≠ T224), N152 (≠ G225), I153 (≠ Y226), A156 (≠ G229), I157 (≠ A230), P211 (= P292), D212 (≠ T293), S213 (= S294), S217 (= S298), T218 (≠ C299), G220 (= G301), G221 (= G302), W222 (≠ N303), A224 (= A305), T225 (≠ M306), S227 (≠ A308), S228 (≠ G309), H230 (≠ K311)
Sites not aligning to the query:
O96759 Alkyldihydroxyacetonephosphate synthase; Alkyl-DHAP synthase; Alkylglycerone-phosphate synthase; EC 2.5.1.26 from Dictyostelium discoideum (Social amoeba) (see paper)
23% identity, 13% coverage: 167:334/1324 of query aligns to 108:278/611 of O96759
- 169:175 (vs. 219:225, 57% identical) binding
- 237:243 (vs. 293:299, 29% identical) binding
- TCSSGH 250:255 (≠ MNAGGK 306:311) binding
Sites not aligning to the query:
- 301:307 binding
- 352 R→H: 30-fold reduction in activity.
- 447 R→L: Loss of activity. The FAD binds poorly to the mutant enzyme.
- 508 active site, Proton donor/acceptor; Y→F: Loss of activity.
- 544 H→I: Loss of activity.
- 545 H→I: Loss of activity.
- 546 H→I: Loss of activity.
O00116 Alkyldihydroxyacetonephosphate synthase, peroxisomal; Alkyl-DHAP synthase; Aging-associated gene 5 protein; Alkylglycerone-phosphate synthase; EC 2.5.1.26 from Homo sapiens (Human) (see 2 papers)
26% identity, 11% coverage: 191:333/1324 of query aligns to 206:343/658 of O00116
Sites not aligning to the query:
- 182 R → Q: in RCDP3; severely reduced protein levels
- 419 Important for enzyme activity; R → H: in RCDP3; loss of enzyme activity; dbSNP:rs121434411
- 471 E → K: in RCDP3; severely reduced protein levels
- 568 T → M: in RCDP3; does not affect protein levels; dbSNP:rs387907214
2uuuA Alkyldihydroxyacetonephosphate synthase in p212121 (see paper)
23% identity, 13% coverage: 167:334/1324 of query aligns to 97:267/550 of 2uuuA
- binding flavin-adenine dinucleotide: K113 (vs. gap), P158 (= P219), M159 (≠ R220), G160 (= G221), G161 (= G222), G162 (= G223), S163 (≠ T224), N164 (≠ G225), I165 (≠ Y226), A168 (≠ G229), I169 (≠ A230), P225 (= P292), D226 (≠ T293), S227 (= S294), S231 (= S298), T232 (≠ C299), G234 (= G301), G235 (= G302), W236 (≠ N303), A238 (= A305), T239 (≠ M306), S241 (≠ A308), S242 (≠ G309), H244 (≠ K311)
- binding hexadecan-1-ol: I165 (≠ Y226)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 19, 283, 284, 287, 288, 289, 426, 546
- binding hexadecan-1-ol: 53, 58, 425, 426, 428, 429, 432, 439, 441, 474, 492
5adzC Ether lipid-generating enzyme agps in complex with inhibitor 1a (see paper)
25% identity, 11% coverage: 191:333/1324 of query aligns to 126:263/557 of 5adzC