Comparing RR42_RS04390 FitnessBrowser__Cup4G11:RR42_RS04390 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2ia4B Crystal structure of novel amino acid binding protein from shigella flexneri
58% identity, 90% coverage: 30:305/306 of query aligns to 1:277/278 of 2ia4B
2vhaA Debp (see paper)
58% identity, 89% coverage: 33:305/306 of query aligns to 3:276/276 of 2vhaA
8ovoA X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
58% identity, 80% coverage: 33:278/306 of query aligns to 1:247/503 of 8ovoA
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
26% identity, 79% coverage: 33:274/306 of query aligns to 1:234/243 of 5eyfB
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
27% identity, 77% coverage: 38:274/306 of query aligns to 3:227/229 of 6svfA
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
28% identity, 78% coverage: 37:275/306 of query aligns to 2:229/229 of 5t0wA
2yjpA Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
26% identity, 77% coverage: 37:272/306 of query aligns to 3:229/247 of 2yjpA
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
24% identity, 75% coverage: 45:274/306 of query aligns to 4:225/226 of 4zv1A
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
25% identity, 75% coverage: 45:274/306 of query aligns to 4:223/225 of 4zv2A
4ymxA Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
26% identity, 75% coverage: 45:275/306 of query aligns to 1:223/224 of 4ymxA
8eyzA Engineered glutamine binding protein bound to gln and a cobaloxime ligand (see paper)
26% identity, 72% coverage: 56:274/306 of query aligns to 14:221/226 of 8eyzA
Sites not aligning to the query:
4ohnA Crystal structure of an abc uptake transporter substrate binding protein from streptococcus pneumoniae with bound histidine
21% identity, 81% coverage: 35:281/306 of query aligns to 3:246/246 of 4ohnA
1xt8B Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
23% identity, 79% coverage: 36:278/306 of query aligns to 5:234/251 of 1xt8B
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
23% identity, 59% coverage: 92:273/306 of query aligns to 55:229/231 of 2v25A
Sites not aligning to the query:
4i62A 1.05 angstrom crystal structure of an amino acid abc transporter substrate-binding protein abpa from streptococcus pneumoniae canada mdr_19a bound to l-arginine
22% identity, 79% coverage: 38:278/306 of query aligns to 1:235/237 of 4i62A
3k4uE Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
23% identity, 75% coverage: 45:274/306 of query aligns to 4:226/234 of 3k4uE
6h2tA Glnh bound to glu, mycobacterium tuberculosis (see paper)
22% identity, 60% coverage: 97:280/306 of query aligns to 102:282/288 of 6h2tA
6h20A Glnh bound to asn, mycobacterium tuberculosis (see paper)
22% identity, 60% coverage: 97:280/306 of query aligns to 101:281/287 of 6h20A
6h1uA Glnh bound to asp, mycobacterium tuberculosis (see paper)
22% identity, 60% coverage: 97:280/306 of query aligns to 101:281/287 of 6h1uA
2q2cA Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus (see paper)
23% identity, 75% coverage: 47:274/306 of query aligns to 3:220/231 of 2q2cA
>RR42_RS04390 FitnessBrowser__Cup4G11:RR42_RS04390
MKSQVRSNRFSRCLLAVAMLAGTAGAVSNAHAADGDTLRKIKETGVISLGYRESSIPFSY
TNGRDVMGYSHEILLQIVDKVKAQLQNPKLDIKLVPITSQNRISLMQNGTIDIECGTTTN
NLERQKQVAFSNSLFVYGLRMLTRKDSGVKDFPDLKDRNVVTTAGTTDERLLVKMNGEKT
MNMNLISAKDHGQSFLILETGRAVAFVMDEPLLYGELTKAKSANDWTVVGTPLQTENYAC
MFRKDDPSFKALADGVIADLMTSGRAEQLYKKWFQSPIPPRNINLNYPLSADMKDLYAHP
NDKAFQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory