SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS04400 FitnessBrowser__Cup4G11:RR42_RS04400 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
38% identity, 92% coverage: 12:213/219 of query aligns to 13:214/215 of 4ymtC

query
sites
4ymtC
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P
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L
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G
M
 
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I
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M
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G
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L
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A
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L
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M
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M
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S
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I
P
 
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P
P
 
I
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K
A
 
L
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V
A
 
A
R
 
S
A
 
S
Y
 
Y
V
 
I
S
 
E
I
 
V
M
 
I
R
 
R
G
 
G
T
 
T
P
|
P
L
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L
L
 
L
V
 
V
Q
 
Q
I
 
L
F
 
L
V
 
L
V
 
I
Y
 
Y
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N
G
 
G
L
 
L
P
 
M
G
 
Q
I
 
F
G
 
G
I
 
M
A
 
N
L
 
I
E
 
P
P
 
A
T
 
F
P
 
T
A
 
A
G
 
G
V
 
V
L
 
S
T
 
A
L
 
L
S
 
A
L
 
I
N
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N
V
 
S
G
 
S
A
 
A
Y
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Y
L
 
V
S
 
A
E
 
E
S
 
I
M
 
I
R
 
R
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A
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G
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I
L
 
Q
G
 
A
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V
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D
R
 
P
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G
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Q
W
 
N
L
 
E
A
 
A
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A
Y
 
R
S
 
S
L
 
L
G
 
G
L
 
M
T
 
T
Q
 
H
G
 
A
Q
 
M
A
 
A
L
 
M
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R
Y
 
Y
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V
I
 
I
G
 
I
P
 
P
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Q
A
 
A
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I
R
 
K
L
 
N
A
 
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L
P
 
P
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A
L
 
L
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G
N
 
N
S
x
E
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F
I
 
I
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V
L
x
M
I
 
L
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K
D
x
E
T
 
S
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A
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I
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V
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S
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I
 
I
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G
V
 
F
T
 
A
E
 
D
L
 
L
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T
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R
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Q
A
 
A
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D
E
 
I
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I
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T
Y
 
Y
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Y
L
 
F
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E
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P
Y
 
Y
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I
A
 
I
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I
A
 
A
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A
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I
Y
 
Y
W
 
F
M
 
V
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M
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T
 
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F
A
 
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K
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L
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L
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S
L
 
L
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F
E
 
E
R
 
R
R
 
R
L
 
L

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
38% identity, 92% coverage: 12:213/219 of query aligns to 13:214/214 of 4ymwC

query
sites
4ymwC
P
 
P
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L
 
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S
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G
M
 
L
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I
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M
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L
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K
F
 
L
A
 
T
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F
L
 
L
S
 
A
M
 
V
I
 
T
F
 
I
G
 
G
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L
L
 
M
G
 
G
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L
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I
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A
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Y
L
 
F
P
 
E
L
 
P
Y
 
Y
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I
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I
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I
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A
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A
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I
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Y
W
 
F
M
 
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M
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L
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L
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S
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L
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F
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R
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R
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L

Query Sequence

>RR42_RS04400 FitnessBrowser__Cup4G11:RR42_RS04400
MSALQLVATSLPVLLQGMLLTIKFALLSMIFGLVLGTVVALMGISHQPVPKAVARAYVSI
MRGTPLLVQIFVVYYGLPGIGIALEPTPAGVLTLSLNVGAYLSESMRGAILGIPRGQWLA
AYSLGLTQGQALRYVIGPQALRLAVPSLSNSLISLIKDTSLVSVITVTELLRTAQEVIAA
TYQPLPLYLAVAAIYWMLSTALAHMQRLLERRLSLPGRH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory