Comparing RR42_RS04565 FitnessBrowser__Cup4G11:RR42_RS04565 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
4qhqA The structure of a nutrient binding protein from burkholderia cenocepacia bound to methionine
58% identity, 89% coverage: 30:265/265 of query aligns to 2:241/241 of 4qhqA
3tqwA Structure of a abc transporter, periplasmic substrate-binding protein from coxiella burnetii (see paper)
54% identity, 89% coverage: 30:264/265 of query aligns to 2:235/235 of 3tqwA
4yahX Crystal structure of the methionine binding protein, metq (see paper)
52% identity, 89% coverage: 30:265/265 of query aligns to 5:243/245 of 4yahX
3k2dA Crystal structure of immunogenic lipoprotein a from vibrio vulnificus (see paper)
51% identity, 89% coverage: 22:258/265 of query aligns to 1:237/237 of 3k2dA
P04846 Lipoprotein 28 from Escherichia coli (strain K12) (see paper)
45% identity, 90% coverage: 28:265/265 of query aligns to 32:272/272 of P04846
Sites not aligning to the query:
4ib2A Crystal structure of a putative lipoprotein (rumgna_00858) from ruminococcus gnavus atcc 29149 at 1.76 a resolution
42% identity, 89% coverage: 28:262/265 of query aligns to 6:244/247 of 4ib2A
3gxaC Crystal structure of gna1946 (see paper)
43% identity, 87% coverage: 28:258/265 of query aligns to 1:231/244 of 3gxaC
6dzxA Crystal structure of the n. Meningitides methionine-binding protein in its d-methionine bound conformation. (see paper)
43% identity, 86% coverage: 30:258/265 of query aligns to 2:230/240 of 6dzxA
1p99A 1.7a crystal structure of protein pg110 from staphylococcus aureus (see paper)
41% identity, 87% coverage: 30:259/265 of query aligns to 2:235/255 of 1p99A
4oteB Crystal structure of a putative lipoprotein (cd630_1653) from clostridium difficile 630 at 2.20 a resolution
36% identity, 90% coverage: 27:265/265 of query aligns to 3:240/240 of 4oteB
1xs5A The crystal structure of lipoprotein tp32 from treponema pallidum (see paper)
30% identity, 88% coverage: 26:258/265 of query aligns to 1:233/240 of 1xs5A
6jf1A Crystal structure of the substrate binding protein of a methionine transporter from streptococcus pneumoniae (see paper)
33% identity, 86% coverage: 30:256/265 of query aligns to 13:251/260 of 6jf1A
Sites not aligning to the query:
4ntlA Crystal structure of a lipoprotein, yaec family (ef3198) from enterococcus faecalis v583 at 1.80 a resolution
34% identity, 90% coverage: 27:265/265 of query aligns to 1:242/242 of 4ntlA
>RR42_RS04565 FitnessBrowser__Cup4G11:RR42_RS04565
MQRRNLLQWIVGAALGATLATGAMAQEKPIKIGVTGGPHAQIMEQVKKVAAKDGLNIQLV
EFSDYVQPNAALAAGDLDANSYQHLPYLEAQIKDRGYKFTHIAFTVTFPMGVYSKKIKSL
DQLKDGARVGVPNDPTNGGRGLLLLQSKGLIKLRPDAGLKATPLDIVSNPKKIRIVELDA
AQLPRSLDDLDAAAINGNYAESAGLSPTKDAIAMEGPKGPYANLIAIREADKNKPWVAKL
VKAYHSPEIKQYVQSTFKDSVITAW
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory