Comparing RR42_RS05105 FitnessBrowser__Cup4G11:RR42_RS05105 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
5d2kA 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed with magnesium and 2-oxoadipate (see paper)
41% identity, 84% coverage: 33:254/263 of query aligns to 41:262/263 of 5d2kA
5d2jA 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed with magnesium and adipate (see paper)
41% identity, 84% coverage: 33:254/263 of query aligns to 41:262/263 of 5d2jA
5d2iA 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed with calcium and acetate (see paper)
41% identity, 84% coverage: 33:254/263 of query aligns to 41:262/263 of 5d2iA
5d2hA 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed with magnesium and alpha-ketoglutarate (see paper)
41% identity, 84% coverage: 33:254/263 of query aligns to 41:262/263 of 5d2hA
5d2gA 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed with magnesium (see paper)
41% identity, 84% coverage: 33:254/263 of query aligns to 41:262/263 of 5d2gA
2eb5A Crystal structure of hpcg complexed with oxalate (see paper)
39% identity, 84% coverage: 33:254/263 of query aligns to 39:258/259 of 2eb5A
2eb6A Crystal structure of hpcg complexed with mg ion (see paper)
38% identity, 84% coverage: 33:254/263 of query aligns to 39:266/267 of 2eb6A
P42270 2-oxo-hept-4-ene-1,7-dioate hydratase; OHED hydratase; EC 4.2.1.163 from Escherichia coli (see paper)
38% identity, 84% coverage: 33:254/263 of query aligns to 39:266/267 of P42270
>RR42_RS05105 FitnessBrowser__Cup4G11:RR42_RS05105
MRAAADLLWQAHAGHAPCLPVRTLIGETDPRAAYQVQEINTQRWLAAGRRLVGRKIGLTS
RAVQQQLGVGEPDFGMLFADMAVAEGEEIDLRRVLQPRIEAEIALVLAHPLAHERHTIAD
LIRATAYALPAAEIVGSRVANWDIRLNDTIADNASSGLFALGSRPVKLADLDLIGCGMAM
ERRGEQVSLGAGAACLGNPLHAALWLADTMVRVGRPLQAGDIVMTGALGPMVPVAAGDVF
DLEIEGLGRLSTRFAPANKEPSA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory