SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS06130 FitnessBrowser__Cup4G11:RR42_RS06130 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

1kofA Crystal structure of gluconate kinase (see paper)
42% identity, 94% coverage: 2:160/169 of query aligns to 8:170/171 of 1kofA

query
sites
1kofA
I
 
I
Y
 
Y
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
|
G
S
 
S
G
|
G
K
|
K
T
x
S
T
x
A
V
 
V
G
 
A
Q
 
S
L
 
E
L
 
V
A
 
A
K
 
H
T
 
Q
L
 
L
Q
 
H
C
 
A
G
 
A
F
 
F
H
 
L
D
 
D
A
 
G
D
 
D
E
 
F
F
 
L
H
 
H
S
 
P
A
 
R
A
 
R
N
 
N
K
 
I
A
 
E
K
 
K
M
 
M
H
 
A
N
 
S
G
 
G
I
 
E
P
 
P
L
 
L
T
 
N
D
 
D
D
 
D
D
 
D
R
 
R
W
 
K
P
 
P
W
 
W
L
 
L
A
 
Q
A
 
A
M
 
L
R
 
N
A
 
D
A
 
A
I
 
A
D
 
F
A
 
A
A
 
M
R
 
Q
A
 
R
E
 
T
G
 
N
R
 
K
T
 
V
H
 
S
V
 
L
F
 
I
T
 
V
C
 
C
S
 
S
A
 
A
L
 
L
R
 
K
Q
 
K
T
 
H
Y
 
Y
R
 
R
D
 
D
R
 
L
L
 
L
T
 
R
P
 
E
A
 
G
D
 
N
G
 
P
G
 
N
V
 
L
T
 
S
F
 
F
V
 
I
Y
 
Y
M
 
L
K
 
K
G
 
G
D
 
D
A
 
F
A
 
D
I
 
V
I
 
I
G
 
E
G
 
S
R
|
R
L
 
L
A
 
K
E
 
A
R
 
R
S
 
K
E
 
G
H
 
H
F
 
F
F
 
F
N
 
K
P
 
T
A
 
Q
L
 
M
L
 
L
Q
 
V
S
 
T
Q
 
Q
F
 
F
E
 
E
T
 
T
L
 
L
E
 
Q
E
 
E
P
 
P
-
 
G
-
 
A
-
 
D
-
 
E
R
 
T
E
 
D
A
 
V
L
 
L
V
 
V
L
 
V
D
 
D
I
 
I
R
 
D
Q
 
Q
T
 
P
P
x
L
E
 
E
A
 
G
L
 
V
V
 
V
Q
 
A
C
 
S
I
 
T
L
 
I
A
 
E
G
 
V
V
 
I
Q
 
K

1ko8A Crystal structure of gluconate kinase (see paper)
42% identity, 94% coverage: 2:160/169 of query aligns to 8:170/172 of 1ko8A

query
sites
1ko8A
I
 
I
Y
 
Y
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
 
G
S
 
S
G
 
G
K
 
K
T
 
S
T
 
A
V
 
V
G
 
A
Q
 
S
L
 
E
L
 
V
A
 
A
K
 
H
T
 
Q
L
 
L
Q
 
H
C
 
A
G
 
A
F
 
F
H
 
L
D
 
D
A
 
G
D
 
D
E
 
F
F
 
L
H
 
H
S
 
P
A
 
R
A
 
R
N
 
N
K
 
I
A
 
E
K
 
K
M
 
M
H
 
A
N
 
S
G
 
G
I
 
E
P
 
P
L
 
L
T
 
N
D
 
D
D
 
D
D
 
D
R
 
R
W
 
K
P
 
P
W
 
W
L
 
L
A
 
Q
A
 
A
M
 
L
R
 
N
A
 
D
A
 
A
I
 
A
D
 
F
A
 
A
A
 
M
R
 
Q
A
 
R
E
 
T
G
 
N
R
 
K
T
 
V
H
 
S
V
 
L
F
 
I
T
 
V
C
 
C
S
 
S
A
 
A
L
 
L
R
 
K
Q
 
K
T
 
H
Y
 
Y
R
 
R
D
 
D
R
 
L
L
 
L
T
 
R
P
 
E
A
 
G
D
 
N
G
 
P
G
 
N
V
 
L
T
 
S
F
 
F
V
 
I
Y
 
Y
M
 
L
K
 
K
G
 
G
D
 
D
A
 
F
A
 
D
I
 
V
I
 
I
G
 
E
G
 
S
R
 
R
L
|
L
A
 
K
E
 
A
R
 
R
S
 
K
E
 
G
H
 
H
F
 
F
F
 
F
N
 
K
P
 
T
A
 
Q
L
 
M
L
 
L
Q
 
V
S
 
T
Q
 
Q
F
 
F
E
 
E
T
 
T
L
 
L
E
 
Q
E
 
E
P
 
P
-
 
G
-
 
A
-
 
D
-
 
E
R
 
T
E
 
D
A
 
V
L
 
L
V
 
V
L
 
V
D
 
D
I
 
I
R
 
D
Q
 
Q
T
 
P
P
 
L
E
 
E
A
 
G
L
 
V
V
 
V
Q
 
A
C
 
S
I
 
T
L
 
I
A
 
E
G
 
V
V
 
I
Q
 
K

1ko5A Crystal structure of gluconate kinase (see paper)
42% identity, 94% coverage: 2:160/169 of query aligns to 8:170/172 of 1ko5A

query
sites
1ko5A
I
 
I
Y
 
Y
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
|
G
S
 
S
G
|
G
K
|
K
T
x
S
T
 
A
V
 
V
G
 
A
Q
 
S
L
 
E
L
 
V
A
 
A
K
 
H
T
 
Q
L
 
L
Q
 
H
C
 
A
G
 
A
F
 
F
H
 
L
D
 
D
A
 
G
D
 
D
E
 
F
F
 
L
H
 
H
S
 
P
A
 
R
A
 
R
N
 
N
K
 
I
A
 
E
K
 
K
M
 
M
H
 
A
N
 
S
G
 
G
I
 
E
P
 
P
L
 
L
T
 
N
D
 
D
D
 
D
D
 
D
R
 
R
W
 
K
P
 
P
W
 
W
L
 
L
A
 
Q
A
 
A
M
 
L
R
 
N
A
 
D
A
 
A
I
 
A
D
 
F
A
 
A
A
 
M
R
 
Q
A
 
R
E
 
T
G
 
N
R
 
K
T
 
V
H
 
S
V
 
L
F
 
I
T
 
V
C
 
C
S
 
S
A
 
A
L
 
L
R
 
K
Q
 
K
T
 
H
Y
 
Y
R
 
R
D
 
D
R
 
L
L
 
L
T
 
R
P
 
E
A
 
G
D
 
N
G
 
P
G
 
N
V
 
L
T
 
S
F
 
F
V
 
I
Y
 
Y
M
 
L
K
 
K
G
 
G
D
 
D
A
 
F
A
 
D
I
 
V
I
 
I
G
 
E
G
 
S
R
|
R
L
 
L
A
 
K
E
 
A
R
|
R
S
 
K
E
 
G
H
 
H
F
 
F
F
 
F
N
 
K
P
 
T
A
 
Q
L
 
M
L
 
L
Q
 
V
S
 
T
Q
 
Q
F
 
F
E
 
E
T
 
T
L
 
L
E
 
Q
E
 
E
P
 
P
-
 
G
-
 
A
-
 
D
-
 
E
R
 
T
E
 
D
A
 
V
L
 
L
V
 
V
L
 
V
D
 
D
I
 
I
R
 
D
Q
 
Q
T
 
P
P
x
L
E
 
E
A
 
G
L
 
V
V
 
V
Q
 
A
C
 
S
I
 
T
L
 
I
A
 
E
G
 
V
V
 
I
Q
 
K

Query Sequence

>RR42_RS06130 FitnessBrowser__Cup4G11:RR42_RS06130
MIYILMGVSGSGKTTVGQLLAKTLQCGFHDADEFHSAANKAKMHNGIPLTDDDRWPWLAA
MRAAIDAARAEGRTHVFTCSALRQTYRDRLTPADGGVTFVYMKGDAAIIGGRLAERSEHF
FNPALLQSQFETLEEPREALVLDIRQTPEALVQCILAGVQAQKGVAIAR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory