SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS07270 FitnessBrowser__Cup4G11:RR42_RS07270 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
23% identity, 31% coverage: 694:1202/1626 of query aligns to 422:899/1042 of Q54VI3

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Q54VI3
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Query Sequence

>RR42_RS07270 FitnessBrowser__Cup4G11:RR42_RS07270
MLAESEARQAQLLADLMQFAQGRLPGDMFVQAEPFLRHYYDLADAEDLLKRNVADLYGAV
MAHWQTAQRFVPGNARLRVYNPNLEQHGWHSDHSVVEIVNDDMPFLVDSVTMEINRLGLA
LHSAIHPVFRVWRNADGTIAKVGLGGEGDTATSEPAGGPRLESFIHFEVDRCGDTATQEA
LRNGIARVLGDVRAAVQDWPAMTAITRATIDMLAQGPDGNQPDTQEACAFLQWMLDEHFT
FLGQRDYELVARDDRFYLRGVPGSGTGILSEILHPPEEDTLTELPAAATSVIEDTSPIFV
TKANSRSTVHRPGYLDYVGIKLKDANGKLFGERRFVGLYTSTTYMMSCEDIPLVRRKFGN
ILTRAGFLTKGHLYKSLVTIIEQYPRDELFQAEEDELFHITLGILRLQEHQRIRLFVRRD
RFDRFVSCLVFVPRDKYNTDLRQRIQKLLMAAFCGNTCEFTPQLSESPLARIQLIVRGEP
GTMPEVNPDELEERIVQAARRWQDDLAAALLDSTGEEQGNRLLRRYGDSFPAGYREDYPA
RIAVRDIELMEAAQATGGIAMNLYRPIEAAPGAFRFKVYRAREPIALSLSLPMLEHLGVR
VDEERPYLIEPNGAAPVWIHDFGLEMADGVAAGIDLGADIARIKALFEDAFARAWNGEIE
NDDFNRLVLRAELAARDVTILRAYARYLRQVGSTFSDAYIERALTGNPAIASRFVELFVA
RFDPATENARAARCERLQQAIGTELDQVPNLDEDRILRLFLGVINATVRTNYFRHGPDGG
PRPYLSFKFNPALVPGLPEPRPMFEIWVYSPRVEGVHLRGGPVARGGLRWSDRREDFRTE
VLGLMKAQMVKNTVIVPVGSKGGFVVKRPPPANDRDAFLQEGIACYQTFLRGLLDVTDNR
VAGTLVPPPEVVREDGDDPYLVVAADKGTASFSDYANAISAEYGFWLSDAFASGGSVGYD
HKKMAITARGAWESVKRHFREMGVDIQSTDFTVAGIGDMSGDVFGNGMLLSPHIKLVAAF
DHRHIFLDPNPDPAASLRERQRMFELPRSSWADYDMSLVSAGGGLFPRTAKTIAITPQVQ
ASLGISASVLSPAELVHAILLAPVDLLYNGGIGTYVKSSRESHLQVGDRANDAVRVNGAE
LRCKVVGEGGNLGFTQLGRIEFALNGGRINTDAIDNSAGVDCSDHEVNIKILLGLVVADG
EMTEKQRNKLLAQMTDEVGLLVLEDNYYQSQALSVAGRNAPALLDAEGRLIRWLERAGRL
KRALEFLPTEDELGERKAAGLGLTSPERAVLLAYSKMWLYDELLTSALPEDPLVAGLLPA
YFPQPLRERHADTMLRHPLRREILATHLTNTLVNRIGATFVHRMQEETDARPADIVRACL
IARDVFGLDPLWLRIDALDNQVDDDVQARMFAAVGRLLDHASLWFLRHPHAGGPTDGDSA
RYAEAAAWLTPQLPALLAGAEATTLMQWRQDLTQSGVDDELALRVAAGEICAAALDIADV
AAATQRSLALVAGVYFALDTEFSFSWLRERALALPADSHWDLLARTTTLEDLGRLKRALT
VSVLAQPQELDTPAQLIEAWRGERQAQIERFSRMLADQRASGAAGLSMLSVAVREIGLLE
SRQGRA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory