Comparing RR42_RS07835 FitnessBrowser__Cup4G11:RR42_RS07835 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
Q8NLB7 Gentisate transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
28% identity, 48% coverage: 41:250/434 of query aligns to 56:247/444 of Q8NLB7
Sites not aligning to the query:
P36035 Carboxylic acid transporter protein homolog from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
23% identity, 78% coverage: 46:383/434 of query aligns to 154:499/616 of P36035
Sites not aligning to the query:
>RR42_RS07835 FitnessBrowser__Cup4G11:RR42_RS07835
MTAVSASGSSNSGAAASAAPASRHPWRAVISASIGNALEWFDLVVYGFFAVTISALFFPN
HDENTSLLLTLGTFGVSFFMRPLGAVVIGVYADRKGRRAALTLSILLMMVGTLIIALLPT
YAAIGVMAPIGIVLARMIQGFSAGGEFGSATAFLAEHAPNRRGFYSSFQVASQGLTTLLA
AGFGAVLTTTLTPDQMQSWGWRVPFLFGLLIGPVAYYIRRHVDETPEFLQAETTDTPLRD
TLSHQKERLLLAMGVVIVATVSTYLVLYMPTYAVKQLGLPPSAAFAATLATGVVQMLFAP
LVGHWSDRYGRIPPMRLAALLLLVSIWPLFWLLSHYPGFGVMLAVQVVLGLMMTLYFGAL
PALASEIFPVKTRTTGLSLSYNIAVTLFGGFAPFILTWLISATGSKLAPSFYLMVCAVVS
LAALGQTRARLGIR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory