SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing RR42_RS09460 FitnessBrowser__Cup4G11:RR42_RS09460 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
35% identity, 95% coverage: 12:269/271 of query aligns to 11:282/282 of Q58484

query
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Q58484

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GAGGA 130:134 (= GAGGA 126:130) binding
NRTVEK 152:157 (≠ NRTAAR 149:154) binding
T196 (= T185) binding
M200 (vs. gap) binding
L224 (≠ A210) binding

1nvtB Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
35% identity, 95% coverage: 12:269/271 of query aligns to 16:287/287 of 1nvtB

query
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1nvtB

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active site: K75 (= K67), D111 (= D103)
binding nadp nicotinamide-adenine-dinucleotide phosphate: I72 (≠ M64), G135 (= G126), G137 (= G128), G138 (= G129), A139 (= A130), N157 (= N149), R158 (= R150), T159 (= T151), K162 (≠ R154), A200 (= A184), T201 (= T185), P202 (≠ A186), I203 (≠ A187), M205 (vs. gap), L229 (≠ A210), Y231 (≠ F212), M255 (= M236), L256 (≠ M237)
binding zinc ion: E22 (vs. gap), H23 (vs. gap)

1nvtA Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
35% identity, 95% coverage: 12:269/271 of query aligns to 16:287/287 of 1nvtA

query
sites
1nvtA

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active site: K75 (= K67), D111 (= D103)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G135 (= G126), A139 (= A130), N157 (= N149), R158 (= R150), T159 (= T151), K162 (≠ R154), A200 (= A184), T201 (= T185), P202 (≠ A186), I203 (≠ A187), M205 (vs. gap), L229 (≠ A210), Y231 (≠ F212), G252 (= G233), M255 (= M236), L256 (≠ M237)

2hk9B Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
34% identity, 84% coverage: 25:251/271 of query aligns to 35:253/267 of 2hk9B

query
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2hk9B

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binding nadp nicotinamide-adenine-dinucleotide phosphate: V67 (≠ M64), G130 (= G126), G133 (= G129), A134 (= A130), N153 (= N149), R154 (= R150), T155 (= T151), K158 (≠ R154), T188 (= T185), S189 (≠ A186), V190 (≠ A187), I214 (≠ F212), M238 (= M236), L239 (≠ M237)
binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: N64 (= N61), T66 (≠ S63), K70 (= K67), N91 (= N88), D106 (= D103), Y216 (≠ P214), L239 (≠ M237), Q242 (= Q240)

Sites not aligning to the query:

binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: 19, 21

P44774 Shikimate dehydrogenase-like protein HI_0607; SDH-L; EC 1.1.1.25 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
32% identity, 89% coverage: 8:249/271 of query aligns to 8:251/271 of P44774

query
sites
P44774

L

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I

N

V

N

N

V

D

D

N

G

G

V

F

L

L

T

R

G

A

Y

Y

N

N

T

T

D
|
D

C

Y

I

I

G

A

A

I

V

V

R

K

A

L

F

I

Q

E

E

K

V

Y

T

H

E

L

L

N

Q

K

G

N

K

A

R

K

I

V

A

I

L

V

L

H

G

G

A

S

G

G

A

M

A

A

R

K

A

A

M

V

A

V

Y

A

G

A

L

F

R

K

E

N

A

S

G

G

-

F

A

E

A

K

V

L

T

K

L

I

F

Y

N

A

R

R

T

N

A

V

A

K

R

T

G

G

E

Q

E

Y

L

L

A

A

S

L

L

Y

G

G

L

Y

R

A

F

Y

G

I

G

N

A

S

L

L

S

E

D

N

F

Q

R

Q

A

A

A

-

D

-

F

-

D

D

L

I

L

L

A

V

N

N

A

V

T

T

A

S

A

I

G

G

F

M

R

K

A

G

-

G

-

K

-

E

P

M

D

D

V

L

N

A

P

F

V

P

A

K

G

A

Q

F

L

I

A

D

A

N

H

A

L

S

I

V

V

A

M

F

D

D

A

V

F

A

I

M

P

P

V

V

R

E

S

T

K

P

L

F

I

I

R

R

D

Y

A

A

A

Q

E

A

L

R

G

G

C

K

R

Q

T

T

I

I

D

S

G

G

T

A

R

A

M

V

M

I

L

V

H

L

Q

Q

A

A

C

V

A

E

Q

Q

V

F

E

E

F

L

Y

Y

T

T

K67 (= K67) mutation K->A,H,N: Loss of activity.
D103 (= D103) mutation D->A,N: Loss of activity.

2hk9A Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
34% identity, 84% coverage: 25:251/271 of query aligns to 35:253/269 of 2hk9A

query
sites
2hk9A

N

N

A

A

A

V

Y

Y

R

L

A

A

L

F

E

E

I

I

D

N

Y

-

T

-

F

-

V

-

C

-

F

-

G

-

V

P

Q

E

D

E

V

L

P

K

G

K

A

A

V

F

Q

E

S

G

I

F

R

K

A

A

L

L

G

K

V

V

R

K

G

G

M

I

N
|
N

V

V

S

T

M
x
V

P

P

H

F

K
|
K

Q

E

A

E

V

I

I

I

P

P

H

L

L

L

D

D

H

Y

L

V

D

E

E

D

T

T

A

A

R

K

A

E

I

I

G

G

A

A

V

V

N
|
N

T

T

I

V

N

K

N

F

V

E

D

N

G

G

V

K

L

A

T

Y

G

G

Y

Y

N

N

T

T

D
|
D

C

W

I

I

G

G

A

F

V

L

R

K

A

S

F

L

Q

K

E

S

-

L

V

I

T

P

E

E

L

V

Q

K

G

E

K

K

R

S

I

I

A

L

L

V

L

L

G

G

A

A

G
|
G

A
|
A

A

S

R

R

A

A

M

V

A

I

Y

Y

G

A

L

L

R

V

E

K

A

E

G

G

A

A

A

K

V

V

T

F

L

L

F

W

N
|
N

R
|
R

T
|
T

A

K

A

E

R

K

G

A

E

I

E

K

L

L

A

A

A

Q

S

K

L

F

G

P

L

L

R

E

F

V

G

V

G

N

A

S

L

P

S

E

D

E

F

V

R

-

A

I

A

D

D

K

F

V

D

Q

L

V

L

I

A

V

N

N

A

T

T
|
T

A
x
S

A
x
V

G

G

F

L

R

K

A

D

P

E

D

D

V

P

N

E

P

I

V

F

A

N

G

Y

Q

D

L

L

A

I

A

K

-

K

-

D

H

H

L

V

I

V

V

V

M

-

D

-

A

-

A

D

F

I

I

I

P
x
Y

V

K

R

E

S

T

K

K

L

L

I

L

R

K

D

K

A

A

A

K

E

E

L

K

G

G

C

A

R

K

T

L

I

L

D

D

G

G

T

L

R

P

M

M

M
x
L

L

L

H

W

Q
|
Q

A

G

C

I

A

E

Q

A

V

F

E

K

F

I

Y

W

T

N

G

G

C

C

binding 2'-monophosphoadenosine-5'-diphosphate: V67 (≠ M64), G132 (= G128), G133 (= G129), A134 (= A130), N153 (= N149), R154 (= R150), T155 (= T151), T188 (= T185), S189 (≠ A186), V190 (≠ A187)
binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: N64 (= N61), K70 (= K67), N91 (= N88), D106 (= D103), Y216 (≠ P214), L239 (≠ M237), Q242 (= Q240)

Sites not aligning to the query:

binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: 19, 21

O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5) (see paper)
34% identity, 84% coverage: 25:251/271 of query aligns to 35:253/269 of O67049

query
sites
O67049

N

N

A

A

A

V

Y

Y

R

L

A

A

L

F

E

E

I

I

D

N

Y

-

T

-

F

-

V

-

C

-

F

-

G

-

V

P

Q

E

D

E

V

L

P

K

G

K

A

A

V

F

Q

E

S

G

I

F

R

K

A

A

L

L

G

K

V

V

R

K

G

G

M

I

N

N

V

V

S

T

M

V

P

P

H

F

K

K

Q

E

A

E

V

I

I

I

P

P

H

L

L

L

D

D

H

Y

L

V

D

E

E
x
D

T

T

A

A

R

K

A

E

I

I

G

G

A

A

V

V

N
|
N

T

T

I

V

N

K

N

F

V

E

D

N

G

G

V

K

L

A

T

Y

G

G

Y

Y

N

N

T

T

D
|
D

C

W

I

I

G

G

A

F

V

L

R

K

A

S

F

L

Q

K

E

S

-

L

V

I

T

P

E

E

L

V

Q

K

G

E

K

K

R

S

I

I

A

L

L

V

L

L

G
|
G

A
|
A

G
|
G

A
|
A

A

S

R

R

A

A

M

V

A

I

Y

Y

G

A

L

L

R

V

E

K

A

E

G

G

A

A

A

K

V

V

T

F

L

L

F

W

N

N

R

R

T

T

A

K

A

E

R

K

G

A

E

I

E

K

L

L

A

A

A

Q

S

K

L

F

G

P

L

L

R

E

F

V

G

V

G

N

A

S

L

P

S

E

D

E

F

V

R

-

A

I

A

D

D

K

F

V

D

Q

L

V

L

I

A

V

N

N

A

T

T

T

A

S

A

V

G

G

F

L

R

K

A

D

P

K

D

D

V

P

N

E

P

I

V

F

A

N

G

Y

Q

D

L

L

A

I

A

K

-

K

-

D

H

H

L

V

I

V

V

V

M

-

D

-

A

-

A

D

F
x
I

I

I

P
x
Y

V

K

R

E

S

T

K

K

L

L

I

L

R

K

D

K

A

A

A

K

E

E

L

K

G

G

C

A

R

K

T

L

I

F

D

D

G
|
G

T

L

R

P

M

M

M

L

L

L

H

W

Q
|
Q

A

G

C

I

A

E

Q

A

V

F

E

K

F

I

Y

W

T

N

G

G

C

C

D82 (≠ E79) binding
N91 (= N88) binding
D106 (= D103) binding
GAGGA 130:134 (= GAGGA 126:130) binding
I214 (≠ F212) binding
Y216 (≠ P214) binding
G235 (= G233) binding
Q242 (= Q240) binding

Sites not aligning to the query:

19:21 binding

3tnlA 1.45 angstrom crystal structure of shikimate 5-dehydrogenase from listeria monocytogenes in complex with shikimate and NAD.
33% identity, 89% coverage: 23:264/271 of query aligns to 28:288/288 of 3tnlA

query
sites
3tnlA

I

M

H

H

N

N

A

E

A

A

Y

F

R

A

A

K

L

L

E

G

I

L

D

D

Y

Y

T

V

F

Y

V

L

C

A

F

F

-

E

-

V

G

G

V

D

Q

K

D

E

V

L

P

K

G

D

A

V

V

V

Q

Q

S

G

I

F

R

R

A

A

L

M

G

N

V

L

R

R

G

G

M

W

N
|
N

V

V

S
|
S

M
|
M

P

P

H

N

K
|
K

Q

T

A

N

V

I

I

H

P

K

H

Y

L

L

D

D

H

K

L

L

D

S

E

P

T

A

A

A

R

E

A

L

I

V

G

G

A

A

V

V

N
|
N

T

T

I

V

N

V

N

N

V

D

D

D

G

G

V

V

L

L

T

T

G

G

Y

H

N

I

T

T

D
|
D

C

G

I

T

G

G

A

Y

V

M

R

R

A

A

F

L

Q

K

E

E

V

A

-

G

T

H

E

D

L

I

Q

I

G

G

K

K

R

K

I

M

A

T

L

I

L

C

G
|
G

A
|
A

G
|
G

A
|
A

A

A

R

T

A

A

M

I

A

C

Y

I

-

Q

-

A

-

L

-

D

G

G

L

V

R

K

E

E

A

-

G

-

A

-

V

I

T

S

L

I

F

F

N
|
N

R
|
R

T

K

-
x
D

-

D

-
x
F

A

Y

A

A

R

N

G

A

E

E

E

K

L

T

A

V

A

E

S

K

L

I

G

N

L

S

R

K

F

-

G

-

A

-

L

-

S

T

D

D

F

C

R

K

A

A

A

Q

D

L

F

F

D

D

-

I

-

E

-

D

-

H

-

E

-

Q

-

L

-

R

-

K

-

E

-

I

-

A

-

E

-

S

-

V

L

I

L

F

A

T

N

N

A

A

T
|
T

A

G

A
x
V

G

G

-
x
M

-

K

-

P

F
|
F

R

E

A

G

P

E

D

T

V

L

N

L

P

P

V

S

A

A

G

D

Q

M

L

L

A

R

A

P

H

E

L

L

I

I

V

V

M

S

D

D

A
x
V

A

V

F
x
Y

I

K

P

P

V

T

R

K

S

T

K

R

L

L

I

L

R

E

D

I

A

A

A

E

E

E

L

Q

G

G

C

C

R

Q

T

T

I

L

D

N

G

G

T

L

R

G

M
|
M

L

L

H

W

Q
|
Q

A

G

C

A

A

K

Q

A

V

F

E

E

F

I

Y

W

T

T

G

H

C

-

A

K

R

E

A

M

P

P

I

V

E

D

A

Y

M

I

E

K

A

E

A

I

L

L

L

F

binding nicotinamide-adenine-dinucleotide: M71 (= M64), G134 (= G126), A135 (= A127), G136 (= G128), G137 (= G129), A138 (= A130), N158 (= N149), R159 (= R150), D161 (vs. gap), F163 (vs. gap), T207 (= T185), V209 (≠ A187), M211 (vs. gap), F214 (= F189), V235 (≠ A210), Y237 (≠ F212), M261 (= M236), M262 (= M237)
binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: N68 (= N61), S70 (= S63), K74 (= K67), N95 (= N88), D110 (= D103), Q265 (= Q240)

Sites not aligning to the query:

binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: 23, 25

3tozA 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from listeria monocytogenes in complex with NAD.
33% identity, 89% coverage: 23:264/271 of query aligns to 31:291/291 of 3tozA

query
sites
3tozA

I

M

H

H

N

N

A

E

A

A

Y

F

R

A

A

K

L

L

E

G

I

L

D

D

Y

Y

T

V

F

Y

V

L

C

A

F

F

-

E

-

V

G

G

V

D

Q

K

D

E

V

L

P

K

G

D

A

V

V

V

Q

Q

S

G

I

F

R

R

A

A

L

M

G

N

V

L

R

R

G

G

M

W

N

N

V

V

S

S

M

M

P

P

H

N

K

K

Q

T

A

N

V

I

I

H

P

K

H

Y

L

L

D

D

H

K

L

L

D

S

E

P

T

A

A

A

R

E

A

L

I

V

G

G

A

A

V

V

N

N

T

T

I

V

N

V

N

N

V

D

D

D

G

G

V

V

L

L

T

T

G

G

Y

H

N

I

T

T

D

D

C

G

I

T

G

G

A

Y

V

M

R

R

A

A

F

L

Q

K

E

E

V

A

-

G

T

H

E

D

L

I

Q

I

G

G

K

K

R

K

I

M

A

T

L

I

L

C

G
|
G

A
|
A

G
|
G

A
|
A

A

A

R

T

A

A

M

I

A

C

Y

I

-

Q

-

A

-

L

-

D

G

G

L

V

R

K

E

E

A

-

G

-

A

-

V

I

T

S

L

I

F

F

N
|
N

R
|
R

T

K

-
x
D

-

D

-
x
F

A

Y

A

A

R

N

G

A

E

E

E

K

L

T

A

V

A

E

S

K

L

I

G

N

L

S

R

K

F

-

G

-

A

-

L

-

S

T

D

D

F

C

R

K

A

A

A

Q

D

L

F

F

D

D

-

I

-

E

-

D

-

H

-

E

-

Q

-

L

-

R

-

K

-

E

-

I

-

A

-

E

-

S

-

V

L

I

L

F

A

T

N

N

A

A

T
|
T

A
x
G

A
x
V

G

G

-
x
M

-

K

-

P

F
|
F

R

E

A

G

P

E

D

T

V

L

N

L

P

P

V

S

A

A

G

D

Q

M

L

L

A

R

A

P

H

E

L

L

I

I

V

V

M

S

D

D

A
x
V

A

V

F
x
Y

I

K

P

P

V

T

R

K

S

T

K

R

L

L

I

L

R

E

D

I

A

A

A

E

E

E

L

Q

G

G

C

C

R

Q

T

T

I

L

D

N

G
|
G

T

L

R

G

M
|
M

L

L

H

W

Q

Q

A

G

C

A

A

K

Q

A

V

F

E

E

F

I

Y

W

T

T

G

H

C

-

A

K

R

E

A

M

P

P

I

V

E

D

A

Y

M

I

E

K

A

E

A

I

L

L

L

F

binding nicotinamide-adenine-dinucleotide: G137 (= G126), A138 (= A127), G139 (= G128), G140 (= G129), A141 (= A130), N161 (= N149), R162 (= R150), D164 (vs. gap), F166 (vs. gap), T210 (= T185), G211 (≠ A186), V212 (≠ A187), M214 (vs. gap), F217 (= F189), V238 (≠ A210), Y240 (≠ F212), G261 (= G233), M264 (= M236), M265 (= M237)

Q8Y9N5 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
33% identity, 89% coverage: 23:264/271 of query aligns to 31:291/291 of Q8Y9N5

query
sites
Q8Y9N5

I

M

H

H

N

N

A

E

A

A

Y

F

R

A

A

K

L

L

E

G

I

L

D

D

Y

Y

T

V

F

Y

V

L

C

A

F

F

-

E

-

V

G

G

V

D

Q

K

D

E

V

L

P

K

G

D

A

V

V

V

Q

Q

S

G

I

F

R

R

A

A

L

M

G

N

V

L

R

R

G

G

M

W

N

N

V

V

S

S

M

M

P

P

H

N

K

K

Q

T

A

N

V

I

I

H

P

K

H

Y

L

L

D

D

H

K

L

L

D

S

E

P

T

A

A

A

R

E

A

L

I

V

G

G

A

A

V

V

N

N

T

T

I

V

N

V

N

N

V

D

D

D

G

G

V

V

L

L

T

T

G

G

Y

H

N

I

T

T

D

D

C

G

I

T

G

G

A

Y

V

M

R

R

A

A

F

L

Q

K

E

E

V

A

-

G

T

H

E

D

L

I

Q

I

G

G

K

K

R

K

I

M

A

T

L

I

L

C

G

G

A

A

G

G

A

A

R

T

A

A

M

I

A

C

Y

I

-

Q

-

A

-

L

-

D

G

G

L

V

R

K

E

E

A

-

G

-

A

-

V

I

T

S

L

I

F

F

N
|
N

R
|
R

T
x
K

-
x
D

-

D

-

F

A

Y

A

A

R

N

G

A

E

E

E

K

L

T

A

V

A

E

S

K

L

I

G

N

L

S

R

K

F

-

G

-

A

-

L

-

S

T

D

D

F

C

R

K

A

A

A

Q

D

L

F

F

D

D

-

I

-

E

-

D

-

H

-

E

-

Q

-

L

-

R

-

K

-

E

-

I

-

A

-

E

-

S

-

V

L

I

L

F

A

T

N

N

A

A

T

T

A

G

A

V

G

G

-
x
M

-

K

-

P

F

F

R

E

A

G

P

E

D

T

V

L

N

L

P

P

V

S

A

A

G

D

Q

M

L

L

A

R

A

P

H

E

L

L

I

I

V

V

M

S

D

D

A

V

F

Y

I

K

P

P

V

T

R

K

S

T

K

R

L

L

I

L

R

E

D

I

A

A

A

E

E

E

L

Q

G

G

C

C

R

Q

T

T

I

L

D

N

G

G

T

L

R

G

M

M

L

L

H

W

Q

Q

A

G

C

A

A

K

Q

A

V

F

E

E

F

I

Y

W

T

T

G

H

C

-

A

K

R

E

A

M

P

P

I

V

E

D

A

Y

M

I

E

K

A

E

A

I

L

L

L

F

NRKD 161:164 (≠ NRT- 149:151) binding
M214 (vs. gap) binding

Sites not aligning to the query:

26:28 binding

1o9bA Quinate/shikimate dehydrogenase ydib complexed with nadh (see paper)
34% identity, 91% coverage: 18:263/271 of query aligns to 14:278/280 of 1o9bA

query
sites
1o9bA

T

S

F

L

N

S

V

P

R

E

I

M

H

Q

N

N

A

K

A

A

Y

L

R

E

A

K

L

A

E

G

I

L

D

P

Y

F

T

T

F

Y

V

M

C

A

F

F

G

E

V

V

Q

D

D

N

-

D

-

S

V

F

P

P

G

G

A

A

V

I

Q

E

S

G

I

L

R

K

A

A

L

L

G

K

V

M

R

R

G

G

M

T

N

G

V

V

S

S

M

M

P

P

H

N

K

K

Q

Q

A

L

V

A

I

C

P

E

H

Y

L

V

D

D

H

E

L

L

D

T

E

P

T

A

A

A

R

K

A

L

I

V

G

G

A

A

V

I

N

N

T

T

I

I

N

V

N

N

V

D

D

D

G

G

V

Y

L

L

T

R

G

G

Y

Y

N

N

T

T

D

D

C

G

I

T

G

G

A

H

V

I

R

R

A

A

F

I

Q

K

E

E

V

S

T

G

-

F

E

D

L

I

Q

K

G

G

K

K

R

T

I

M

A

V

L

L

G

G

A
|
A

G
|
G

A
|
A

A

S

R

T

A

A

M

I

-

G

A

A

Y

Q

G

G

L

A

R

I

E

E

A

G

G

L

A

K

A

E

V

I

T

K

L

L

F

F

N

N

R
|
R

T

-

A

-

R

R

G

D

E

E

E
x
F

L

F

A

D

A

K

S

A

L

L

G

A

L

F

-

A

-

Q

R

R

F

V

G

N

-

E

-

N

-

T

-

D

-

C

-

V

-

T

-

V

G

T

A

D

L

L

S

A

D

D

F

Q

R

Q

A

A

-

F

-

A

-

E

-

A

-

L

A

A

D

S

F

A

D

D

L

I

L

L

A

T

N

N

A

G

T

T

A
x
K

A
x
V

G

G

F
x
M

R

K

A

P

P

L

D

E

-

N

-

E

-

S

-

L

V

V

N

N

P

D

V

I

A

S

G

-

Q

L

L

L

A

H

A

P

H

G

L

L

I

L

V

V

M

T

D

E

A
x
C

A

V

F
x
Y

I

N

P

P

V

H

R

M

S

T

K

K

L

L

I

L

R

Q

D

Q

A

A

A

Q

E

Q

L

A

G

G

C

C

R

K

T

T

I

I

D

D

G

G

T

Y

R

G

M
|
M

M
x
L

L

L

H

W

Q

Q

A

G

C

A

A

E

Q

Q

V

F

E

T

F

L

Y

W

T

T

G

G

C

-

A

K

R

D

A

F

P

P

I

L

E

E

A

Y

M

V

E

K

A

Q

A

V

L

M

binding 1,4-dihydronicotinamide adenine dinucleotide: A126 (= A127), G127 (= G128), G128 (= G129), A129 (= A130), R150 (= R150), F154 (≠ E157), K199 (≠ A186), V200 (≠ A187), M202 (≠ F189), C226 (≠ A210), Y228 (≠ F212), M252 (= M236), L253 (≠ M237)

1npdB X-ray structure of shikimate dehydrogenase complexed with NAD+ from e.Coli (ydib) northeast structural genomics research consortium (nesg) target er24 (see paper)
34% identity, 91% coverage: 18:263/271 of query aligns to 20:284/288 of 1npdB

query
sites
1npdB

T

S

F

L

N

S

V

P

R

E

I

M

H

Q

N

N

A

K

A

A

Y

L

R

E

A

K

L

A

E

G

I

L

D

P

Y

F

T

T

F

Y

V

M

C

A

F

F

G

E

V

V

Q

D

D

N

-

D

-

S

V

F

P

P

G

G

A

A

V

I

Q

E

S

G

I

L

R

K

A

A

L

L

G

K

V

M

R

R

G

G

M

T

N

G

V

V

S

S

M

M

P

P

H

N

K

K

Q

Q

A

L

V

A

I

C

P

E

H

Y

L

V

D

D

H

E

L

L

D

T

E

P

T

A

A

A

R

K

A

L

I

V

G

G

A

A

V

I

N

N

T

T

I

I

N

V

N

N

V

D

D

D

G

G

V

Y

L

L

T

R

G

G

Y

Y

N

N

T

T

D

D

C

G

I

T

G

G

A

H

V

I

R

R

A

A

F

I

Q

K

E

E

V

S

T

G

-

F

E

D

L

I

Q

K

G

G

K

K

R

T

I

M

A

V

L

L

G

G

A
|
A

G
|
G

A
|
A

A

S

R

T

A

A

M

I

-

G

A

A

Y

Q

G

G

L

A

R

I

E

E

A

G

G

L

A

K

A

E

V

I

T

K

L

L

F

F

N
|
N

R
|
R

T

-

A

-

R

R

G
x
D

E

E

E
x
F

L

F

A

D

A

K

S

A

L

L

G

A

L

F

-

A

-

Q

R

R

F

V

G

N

-

E

-

N

-

T

-

D

-

C

-

V

-

T

-

V

G

T

A

D

L

L

S

A

D

D

F

Q

R

Q

A

A

-

F

-

A

-

E

-

A

-

L

A

A

D

S

F

A

D

D

L

I

L

L

A

T

N

N

A

G

T
|
T

A
x
K

A
x
V

G

G

F
x
M

R

K

A

P

P

L

D

E

-

N

-

E

-

S

-

L

V

V

N

N

P

D

V

I

A

S

G

-

Q

L

L

L

A

H

A

P

H

G

L

L

I

L

V

V

M

T

D

E

A
x
C

A

V

F

Y

I

N

P

P

V

H

R

M

S

T

K

K

L

L

I

L

R

Q

D

Q

A

A

A

Q

E

Q

L

A

G

G

C

C

R

K

T

T

I

I

D

D

G

G

T

Y

R

G

M
|
M

M
x
L

L

L

H

W

Q

Q

A

G

C

A

A

E

Q

Q

V

F

E

T

F

L

Y

W

T

T

G

G

C

-

A

K

R

D

A

F

P

P

I

L

E

E

A

Y

M

V

E

K

A

Q

A

V

L

M

binding nicotinamide-adenine-dinucleotide: A132 (= A127), G133 (= G128), G134 (= G129), A135 (= A130), N155 (= N149), R156 (= R150), D158 (≠ G155), F160 (≠ E157), T204 (= T185), K205 (≠ A186), V206 (≠ A187), M208 (≠ F189), C232 (≠ A210), M258 (= M236), L259 (≠ M237)

P0A6D5 Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Escherichia coli (strain K12) (see 4 papers)
34% identity, 91% coverage: 18:263/271 of query aligns to 20:284/288 of P0A6D5

query
sites
P0A6D5

T

S

F

L

N
x
S

V

P

R

E

I

M

H

Q

N

N

A

K

A

A

Y

L

R

E

A

K

L

A

E

G

I

L

D

P

Y

F

T

T

F
x
Y

V

M

C

A

F

F

G

E

V

V

Q

D

D

N

-

D

-

S

V

F

P

P

G

G

A

A

V

I

Q

E

S

G

I

L

R

K

A

A

L

L

G

K

V

M

R

R

G

G

M

T

N

G

V

V

S
|
S

M

M

P

P

H

N

K
|
K

Q

Q

A

L

V

A

I

C

P

E

H

Y

L

V

D

D

H

E

L

L

D

T

E

P

T

A

A

A

R

K

A

L

I

V

G

G

A

A

V

I

N
|
N

T

T

I

I

N

V

N

N

V

D

D

D

G

G

V

Y

L

L

T

R

G

G

Y

Y

N

N

T
|
T

D
|
D

C

G

I

T

G

G

A

H

V

I

R

R

A

A

F

I

Q

K

E

E

V

S

T

G

-

F

E

D

L

I

Q

K

G

G

K

K

R

T

I

M

A

V

L

L

G

G

A
|
A

G
|
G

A
|
A

A

S

R

T

A

A

M

I

-

G

A

A

Y

Q

G

G

L

A

R

I

E

E

A

G

G

L

A

K

A

E

V

I

T

K

L

L

F

F

N
|
N

R
|
R

T

-

A

-

R
|
R

G
x
D

E

E

E

F

L

F

A

D

A

K

S

A

L

L

G

A

L

F

-

A

-

Q

R

R

F

V

G

N

-

E

-

N

-

T

-

D

-

C

-

V

-

T

-

V

G

T

A

D

L

L

S

A

D

D

F

Q

R

Q

A

A

-

F

-

A

-

E

-

A

-

L

A

A

D

S

F

A

D

D

L

I

L

L

A

T

N

N

A

G

T

T

A
x
K

A

V

G

G

F

M

R

K

A

P

P

L

D

E

-

N

-

E

-

S

-

L

V

V

N

N

P

D

V

I

A

S

G

-

Q

L

L

L

A

H

A

P

H

G

L

L

I

L

V

V

M

T

D

E

A
x
C

A
x
V

F
x
Y

I
x
N

P

P

V

H

R

M

S

T

K

K

L

L

I

L

R

Q

D

Q

A

A

A

Q

E

Q

L

A

G

G

C

C

R

K

T

T

I

I

D

D

G
|
G

T

Y

R

G

M

M

M

L

L

L

H

W

Q
|
Q

A

G

C

A

A

E

Q

Q

V

F

E

T

F

L

Y

W

T

T

G

G

C

-

A

K

R

D

A

F

P

P

I

L

E

E

A

Y

M

V

E

K

A

Q

A

V

L

M

S22 (≠ N20) mutation to A: Kinetically unchanged as compared with the wild-type.
Y39 (≠ F37) mutation to F: Kinetically unchanged as compared with the wild-type.
S67 (= S63) mutation to A: Reduces activity towards quinate about 6-fold, but has a little effect on shikimate conversion.
K71 (= K67) mutation to A: 3200-fold decrease in the affinity for quinate. 170-fold decrease in the affinity for shikimate.; mutation to G: 10-fold greater reduction in catalytic efficiency is observed with quinate than with shikimate.
N92 (= N88) mutation to A: Alters protein structure. Loss of activity for both substrates.
T106 (= T102) mutation to A: 2000-fold decrease in the affinity for quinate. 70-fold decrease in the affinity for shikimate. 10-fold greater reduction in catalytic efficiency is observed with quinate than with shikimate.
D107 (= D103) mutation to A: Loss of activity towards quinate. 20000-fold decrease in the affinity for shikimate.
AGGA 132:135 (= AGGA 127:130) binding
NR---RD 155:158 (≠ NRTAARG 149:155) binding
K205 (≠ A186) binding
CVYN 232:235 (≠ AAFI 210:213) binding
G255 (= G233) binding
Q262 (= Q240) mutation to A: 3-fold reduction in catalytic efficiency for both substrates.

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

Q5HNV1 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (see paper)
28% identity, 95% coverage: 11:267/271 of query aligns to 4:265/269 of Q5HNV1

query
sites
Q5HNV1

S

A

I

V

M

I

G

G

E

N

P

P

F

I

T

S

F

H

N
x
S

V
x
L

R
x
S

-

P

-

L

I

M

H

H

N

H

A

A

A

N

Y

F

R

Q

A

S

L

L

E

N

I

L

D

E

Y

N

T

T

F

Y

V

E

C

A

F

I

G

N

V

V

-

P

-

V

-

N

-

Q

-

F

Q

Q

D

D

V

I

P

K

G

-

A

-

V

-

Q

K

S

I

I

I

R

S

A

E

L

K

G

S

V

I

R

D

G

G

M

F

N

N

V

V

S
x
T

M

I

P

P

H

H

K

K

Q

E

A

R

V

I

I

I

P

P

H

Y

L

L

D

D

H

D

L

I

D

N

E

E

T

Q

A

A

R

K

A

S

I

V

G

G

A

A

V

V

N
|
N

T

T

I

V

N

L

N

V

V

K

D

D

G

G

V

K

L

W

T

I

G

G

Y

Y

N

N

T

T

D
|
D

C

G

I

I

G

G

A

Y

V

V

R

N

A

G

F

L

Q

K

E

Q

V

I

T

Y

E

E

-

G

L

I

Q

E

G

D

K

A

R

Y

I

I

A

L

L

I

L

L

G

G

A

A

G

G

A

A

A

S

R

K

A

G

M

I

A

A

Y

N

G

E

L

L

R

Y

E

K

-

I

A

V

G

R

A

P

A

T

V

L

T

T

L

V

F

A

N

N

R

R

T

T

A

M

A

S

R

R

G

F

E

N

L

W

A

S

A

L

S

N

L

I

G

N

L

-

R

K

F

I

G

N

G

L

A

S

L

H

S

A

D

E

F

S

R

H

A

L

A

D

D

E

F

F

D

D

L

I

A

I

N

N

A

T

T

T

A

P

A

A

G

G

F

M

R

N

A

G

P

N

D

T

V

D

N

S

P

V

V

I

A

S

-

L

G

N

Q

R

L

L

A

A

A

S

H

H

L

T

I

L

V

V

M

S

D

D

A

I

A

V

F
x
Y

I

N

P

P

V

Y

R

K

S

T

K

P

L

I

I

L

R

I

D

E

A

A

A

E

E

Q

L

R

G

G

C

N

R

P

T

I

I

Y

D

N

G

G

T

L

R

D

M

M

M

F

L

V

H

H

Q
|
Q

A

G

C

A

A

E

Q

S

V

F

E

K

F

I

Y

W

T

T

G

N

C

L

A

-

R

E

A

P

P

D

I

I

E

K

A

A

M

M

E

K

A

N

A

I

L

V

L

I

E

Q

E

K

I

L

SLS 13:15 (≠ NVR 20:22) binding
T60 (≠ S63) binding
N85 (= N88) binding
D100 (= D103) binding
Y211 (≠ F212) Plays a major role in the catalytic process and a minor role in the substrate binding; mutation to F: Leads to a 345-fold decrease in the catalytic efficiency and a 3-fold decrease in the affinity binding for shikimate.
Q239 (= Q240) binding

Q9SQT8 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
35% identity, 91% coverage: 12:257/271 of query aligns to 328:594/603 of Q9SQT8

query
sites
Q9SQT8

I

I

M

I

G

G

E

K

P

P

F

V

T

S

F

H

N
x
S

V

K

R
x
S

-

P

-

I

I

V

H

H

N

N

A

Q

A

A

Y

F

R

K

A

S

L

V

E

D

I

F

D

N

Y

G

T

V

F

Y

V

V

C

H

F

L

G

L

V

V

Q

D

D

N

V

L

P

V

G

S

A

F

V

L

Q

Q

S

A

I

Y

R

S

A

S

L

S

G

D

V

F

R

A

G

G

M

F

N

S

V

C

S
x
T

M

I

P

P

H

H

K
|
K

Q

E

A

A

V

A

I

L

P

Q

H

C

L

C

D

D

H

E

L

V

D

D

E

P

T

L

A

A

R

K

A

S

I

I

G

G

A

A

V

V

N
|
N

T

T

I

I

-

L

-

R

N

R

N

K

V

S

D

D

G

G

V

K

L

L

T

L

G

G

Y

Y

N

N

T

T

D
|
D

C

C

I

I

G

G

A

S

V

I

R

S

A

A

F

I

Q

E

E

D

-

G

-

L

-

R

-

S

-

G

-

D

-

P

-

S

-

V

-

P

-

S

V

S

T

S

E

P

L

L

Q

A

G

S

K

K

R

T

I

V

A

V

L

V

L

I

G

G

A
|
A

G

G

G
|
G

A
|
A

A

G

R

K

A

A

M

L

A

A

Y

Y

G

G

L

A

R

K

E

E

A

K

G

G

A

A

A

K

V

V

T

V

L

I

F

A

N
|
N

R

R

T
|
T

A

Y

A

E

R
|
R

G

A

E

L

E

E

L

L

A

A

A

E

S

A

L

I

G

G

L

-

R

-

F

-

G

G

G

K

A

A

L

L

S

S

-

L

-

T

-

D

-

L

-

D

D

N

F

Y

R

H

A

P

A

E

D

D

F

G

D

M

L

V

L

L

A

A

N

N

A

T

T

T

A

S

A

M

G

G

F
x
M

R

Q

A

-

P

P

D

N

V

V

-

E

N

T

P

P

V

I

A

S

G

K

Q

D

L

A

A

L

A

K

H

H

L

Y

-

A

I

L

V

V

M

F

D

D

A
|
A

A

V

F
x
Y

I

T

P

P

V

R

R

I

S

T

K

R

L

L

I

L

R

R

D

E

A

A

A

E

E

E

L

S

G

G

C

A

R

I

T

T

I

V

D

S

G
|
G

T

S

R

E

M

M

M

F

L

V

H

R

Q
|
Q

A

A

C

Y

A

E

Q
|
Q

V

F

E

E

F

I

Y

F

T

T

G

G

C

L

A

P

R

-

A

A

P

P

I

K

E

E

S336 (≠ N20) binding ; mutation to A: 13-fold decrease in substrate affinity but almost no change in activity.
S338 (≠ R22) binding ; mutation to A: 10-fold decrease in activity, and 9-fold decrease in substrate affinity.
T381 (≠ S63) binding
K385 (= K67) binding ; mutation to A: Strongly reduced shikimate dehydrogenase activity, but minor change in substrate affinity.; mutation to N: Strongly reduced shikimate dehydrogenase activity, but no change in substrate affinity.
N406 (= N88) binding
D423 (= D103) binding ; mutation to A: Loss of shikimate dehydrogenase activity.; mutation to N: Reduced shikimate dehydrogenase activity, but no change in substrate affinity.
A461 (= A127) binding
G463 (= G129) binding
A464 (= A130) binding
N483 (= N149) binding
T485 (= T151) binding
R488 (= R154) binding
M525 (≠ F189) binding
A548 (= A210) binding
Y550 (≠ F212) binding ; mutation Y->F,A: 100-fold decrease in activity, and 2-fold decrease in substrate affinity.
G571 (= G233) binding
Q578 (= Q240) binding
Q582 (= Q244) binding

Sites not aligning to the query:

124 binding
126 binding
155 binding
241 binding
279 binding
300 binding
304 binding

3dooA Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis complexed with shikimate (see paper)
28% identity, 95% coverage: 11:267/271 of query aligns to 4:256/258 of 3dooA

query
sites
3dooA

S

A

I

V

M

I

G

G

E

N

P

P

F

I

T

S

F

H

N
x
S

V

L

R
x
S

-

P

-

L

I

M

H

H

N

H

A

A

A

N

Y

F

R

Q

A

S

L

L

E

N

I

L

D

E

Y

N

T

T

F

Y

V

E

C

A

F

I

G

N

V

V

-

P

-

V

-

N

-

Q

-

F

Q

Q

D

D

V

I

P

K

G

-

A

-

V

-

Q

K

S

I

I

I

R

S

A

E

L

K

G

S

V

I

R

D

G

G

M

F

N
|
N

V

V

S
x
T

M

I

P

P

H

H

K
|
K

Q

E

A

R

V

I

I

I

P

P

H

Y

L

L

D

D

H

D

L

I

D

N

E

E

T

Q

A

A

R

K

A

S

I

V

G

G

A

A

V

V

N
|
N

T

T

I

V

N

L

N

V

V

K

D

D

G

G

V

K

L

W

T

I

G

G

Y

Y

N

N

T

T

D
|
D

C

G

I

I

G

G

A

Y

V

V

R

N

A

G

F

L

Q

K

E

Q

V

I

T

Y

E

E

-

G

L

I

Q

E

G

D

K

A

R

Y

I

I

A

L

L

I

L

L

G

G

A

A

G

G

A

A

A

S

R

K

A

G

M

I

A

A

Y

N

G

E

L

L

R

Y

E

K

-

I

A

V

G

R

A

P

A

T

V

L

T

T

L

V

F

A

N

N

R

R

T

T

A

M

A

S

R

R

G

F

E

N

L

W

A

S

A

L

S

N

L

I

G

N

L

-

R

K

F

I

G

N

G

L

A

S

L

H

S

A

D

E

F

S

R

H

A

L

A

D

D

E

F

F

D

D

L

I

A

I

N

N

A

T

T

T

A

-

G

-

F

-

R

-

A

-

P

-

D

-

V

-

N

-

P

P

V

V

A

I

-

S

-

L

G

N

Q

R

L

L

A

A

A

S

H

H

L

T

I

L

V

V

M

S

D

D

A

I

A

V

F

Y

I

N

P

P

V

Y

R

K

S

T

K

P

L

I

I

L

R

I

D

E

A

A

A

E

E

Q

L

R

G

G

C

N

R

P

T

I

I

Y

D

N

G

G

T

L

R

D

M

M

M
x
F

L

V

H

H

Q
|
Q

A

G

C

A

A

E

Q

S

V

F

E

K

F

I

Y

W

T

T

G

N

C

L

A

-

R

E

A

P

P

D

I

I

E

K

A

A

M

M

E

K

A

N

A

I

L

V

L

I

E

Q

E

K

I

L

binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: S13 (≠ N20), S15 (≠ R22), N58 (= N61), T60 (≠ S63), K64 (= K67), N85 (= N88), D100 (= D103), F227 (≠ M237), Q230 (= Q240)

2o7sA Crystal structure of the a. Thaliana dhq-dehydroshikimate-sdh- shikimate-NADP(h)
36% identity, 91% coverage: 12:257/271 of query aligns to 239:482/500 of 2o7sA

query
sites
2o7sA

I
|
I

M

I

G

G

E

K

P

P

F

V

T

S

F

H

N
x
S

V

K

R
x
S

-

P

-

I

I

V

H

H

N

N

A

Q

A

A

Y

F

R

K

A

S

L

V

E

D

I

F

D

N

Y

G

T

V

F

Y

V

V

C

H

F

L

G

L

V

V

Q

D

D

N

V

L

P

V

G

S

A

F

V

L

Q

Q

S

A

I

Y

R

S

A

S

L

S

G

D

V

F

R

A

G

G

M

F

N

S

V

C

S
x
T

M
x
I

P
|
P

H

H

K
|
K

Q

E

A

A

V

A

I

L

P

Q

H

C

L

C

D

D

H

E

L

V

D

D

E

P

T

L

A

A

R

K

A

S

I

I

G

G

A

A

V

V

N
|
N

T

T

I

I

-

L

-

R

N

R

N

K

V

S

D

D

G

G

V

K

L

L

T

L

G

G

Y

Y

N

N

T

T

D
|
D

C

C

I

I

G

G

A

S

V

I

R

S

A

A

F

I

Q

E

E

D

V

-

T

-

E

-

L

-

Q

-

G

G

K

L

R

T

I

V

A

V

L

V

L

I

G

G

A

A

G
|
G

A
|
A

A

G

R

K

A

A

M

L

A

A

Y

Y

G

G

L

A

R

K

E

E

A

K

G

G

A

A

A

V

V

V

T

-

L

I

F

A

N
|
N

R
|
R

T
|
T

A

Y

A

E

R
|
R

G

A

E

L

E

E

L

L

A

A

A

E

S

A

L

I

G

-

L

-

R

-

F

-

G

G

A

A

L

L

S

S

D

L

F

T

R

D

A

L

A

D

D

N

F

Y

D

E

-

D

-

G

-

M

L

V

L

L

A

A

N

N

A

T

T
|
T

A
x
S

A
x
M

G

G

F

M

R

Q

A

-

P

P

D

N

V

V

-

E

N

T

P

P

V

I

A

S

G

K

Q

D

L

A

A

L

A

K

H

H

L

Y

-

A

I

L

V

V

M

F

D

D

A
|
A

A

V

F
x
Y

I

T

P

P

V

R

R

I

S

T

K

R

L

L

I

L

R

R

D

E

A

A

A

E

E

E

L

S

G

G

C

A

R

I

T

T

I

V

D

S

G

G

T

S

R

E

M
|
M

M
x
F

L

V

H

R

Q
|
Q

A

A

C

Y

A

E

Q
|
Q

V

F

E

E

F

I

Y

F

T

T

G

G

C

L

A

P

R

-

A

A

P

P

I

K

E

E

binding 3-dehydroshikimate: I239 (= I12), S247 (≠ N20), S249 (≠ R22), T292 (≠ S63), K296 (= K67), N317 (= N88), D334 (= D103), Y438 (≠ F212), Q466 (= Q240), Q470 (= Q244)
binding nadp nicotinamide-adenine-dinucleotide phosphate: I293 (≠ M64), P294 (= P65), K296 (= K67), D334 (= D103), G354 (= G128), G355 (= G129), A356 (= A130), N374 (= N149), R375 (= R150), T376 (= T151), R379 (= R154), T409 (= T185), S410 (≠ A186), M411 (≠ A187), A436 (= A210), M462 (= M236), F463 (≠ M237)

Sites not aligning to the query:

active site: 70, 125, 152
binding 3-dehydroshikimate: 35, 152, 190, 202, 211, 212, 215

2gptA Crystal structure of arabidopsis dehydroquinate dehydratase-shikimate dehydrogenase in complex with tartrate and shikimate (see paper)
36% identity, 91% coverage: 12:257/271 of query aligns to 239:480/498 of 2gptA

query
sites
2gptA

I
|
I

M

I

G

G

E

K

P

P

F

V

T

S

F

H

N
x
S

V

K

R
x
S

-

P

-

I

I

V

H

H

N

N

A

Q

A

A

Y

F

R

K

A

S

L

V

E

D

I

F

D

N

Y

G

T

V

F

Y

V

V

C

H

F

L

G

L

V

V

Q

D

D

N

V

L

P

V

G

S

A

F

V

L

Q

Q

S

A

I

Y

R

S

A

S

L

S

G

D

V

F

R

A

G

G

M

F

N

S

V

C

S
x
T

M

I

P

P

H

H

K
|
K

Q

E

A

A

V

A

I

L

P

Q

H

C

L

C

D

D

H

E

L

V

D

D

E

P

T

L

A

A

R

K

A

S

I

I

G

G

A

A

V

V

N
|
N

T

T

I

I

-

L

-

R

N

R

N

K

V

S

D

D

G

G

V

K

L

L

T

L

G

G

Y

Y

N

N

T

T

D
|
D

C

C

I

I

G

G

A

S

V

I

R

S

A

A

F

I

Q

E

E

D

V

-

T

-

E

-

L

-

Q

-

G

G

K

L

R

T

I

V

A

V

L

V

L

I

G

G

A

A

G

G

A

A

A

G

R

K

A

A

M

L

A

A

Y

Y

G

G

L

A

R

K

E

E

A

K

G

G

A

A

A

K

V

V

T

V

L

I

F

A

N

N

R

R

T

T

A

Y

A

E

R

R

G

-

E

-

E

E

L

L

A

A

A

E

S

A

L

I

G

G

L

A

R

L

F

S

G

L

G

T

A

D

L

L

S

D

D

N

F

Y

R

E

A

-

D

D

F

G

D

M

L

V

L

L

A

A

N

N

A

T

T

T

A

S

A

M

G

G

F

M

R

Q

A

-

P

P

D

N

V

V

-

E

N

T

P

P

V

I

A

S

G

K

Q

D

L

A

A

L

A

K

H

H

L

Y

-

A

I

L

V

V

M

F

D

D

A

A

A

V

F
x
Y

I

T

P

P

V

R

R

I

S

T

K

R

L

L

I

L

R

R

D

E

A

A

A

E

E

E

L

S

G

G

C

A

R

I

T

T

I

V

D

S

G

G

T

S

R

E

M

M

M

F

L

V

H

R

Q
|
Q

A

A

C

Y

A

E

Q
|
Q

V

F

E

E

F

I

Y

F

T

T

G

G

C

L

A

P

R

-

A

A

P

P

I

K

E

E

binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: I239 (= I12), S247 (≠ N20), S249 (≠ R22), T292 (≠ S63), K296 (= K67), N317 (= N88), D334 (= D103), Y436 (≠ F212), Q464 (= Q240), Q468 (= Q244)

Sites not aligning to the query:

active site: 70, 125, 152

6bmqA Crystal structure of arabidopsis dehydroquinate dehydratase-shikimate dehydrogenase (t381g mutant) in complex with tartrate and shikimate (see paper)
36% identity, 91% coverage: 12:257/271 of query aligns to 239:480/498 of 6bmqA

query
sites
6bmqA

I

I

M

I

G

G

E

K

P

P

F

V

T

S

F

H

N
x
S

V

K

R
x
S

-

P

-

I

I

V

H

H

N

N

A

Q

A

A

Y

F

R

K

A

S

L

V

E

D

I

F

D

N

Y

G

T

V

F

Y

V

V

C

H

F

L

G

L

V

V

Q

D

D

N

V

L

P

V

G

S

A

F

V

L

Q

Q

S

A

I

Y

R

S

A

S

L

S

G

D

V

F

R

A

G

G

M

F

N

S

V
x
C

S

G

M

I

P

P

H

H

K
|
K

Q

E

A

A

V

A

I

L

P

Q

H

C

L

C

D

D

H

E

L

V

D

D

E

P

T

L

A

A

R

K

A

S

I

I

G

G

A

A

V

V

N
|
N

T

T

I

I

-

L

-

R

N

R

N

K

V

S

D

D

G

G

V

K

L

L

T

L

G

G

Y

Y

N

N

T

T

D
|
D

C

C

I

I

G

G

A

S

V

I

R

S

A

A

F

I

Q

E

E

D

V

-

T

-

E

-

L

-

Q

-

G

G

K

L

R

T

I

V

A

V

L

V

L

I

G

G

A

A

G

G

A

A

A

G

R

K

A

A

M

L

A

A

Y

Y

G

G

L

A

R

K

E

E

A

K

G

G

A

A

A

K

V

V

T

V

L

I

F

A

N

N

R

R

T

T

A

Y

A

E

R

R

G

-

E

-

E

E

L

L

A

A

A

E

S

A

L

I

G

G

L

A

R

L

F

S

G

L

G

T

A

D

L

L

S

D

D

N

F

Y

R

E

A

-

D

D

F

G

D

M

L

V

L

L

A

A

N

N

A

T

T

T

A

S

A

M

G

G

F

M

R

Q

A

-

P

P

D

N

V

V

-

E

N

T

P

P

V

I

A

S

G

K

Q

D

L

A

A

L

A

K

H

H

L

Y

-

A

I

L

V

V

M

F

D

D

A

A

A

V

F
x
Y

I

T

P

P

V

R

R

I

S

T

K

R

L

L

I

L

R

R

D

E

A

A

A

E

E

E

L

S

G

G

C

A

R

I

T

T

I

V

D

S

G

G

T

S

R

E

M

M

M

F

L

V

H

R

Q
|
Q

A

A

C

Y

A

E

Q

Q

V

F

E

E

F

I

Y

F

T

T

G

G

C

L

A

P

R

-

A

A

P

P

I

K

E

E

binding (1S,3R,4S,5R)-1,3,4,5-tetrahydroxycyclohexanecarboxylic acid: S247 (≠ N20), S249 (≠ R22), C291 (≠ V62), K296 (= K67), N317 (= N88), D334 (= D103), Y436 (≠ F212), Q464 (= Q240)

Sites not aligning to the query:

active site: 70, 125, 152

7colA Crystal structure of 5-ketofructose reductase complexed with NADPH (see paper)
38% identity, 90% coverage: 24:267/271 of query aligns to 29:277/280 of 7colA

query
sites
7colA

H

H

N

H

A

A

A

G

Y

L

R

D

A

A

L

R

E

Y

I

I

D

N

Y

C

T

D

F

V

V

K

C

A

F

S

G

G

V

L

Q

A

D

D

V

-

P

-

G

-

A

A

V

V

Q

K

S

G

I

A

R

K

A

A

L

M

G

E

V

W

R

V

G

G

M

F

N

N

V

C

S

S

M

L

P

P

H

H

K

K

Q

V

A

A

V

V

I

L

P

D

H

H

L

L

D

D

H

D

L

I

D

A

E

E

T

S

A

A

R

R

A

L

I

I

G

G

A

A

V

V

N

N

T

C

I

V

N

A

N

I

V

R

D

E

G

G

V

K

L

L

T

I

G

G

Y

H

N

N

T

T

D

D

C

G

I

K

G

G

A

F

V

L

R

A

A

S

F

L

Q

K

E

T

V

V

T

T

E

S

L

P

Q

A

G

G

K

K

R

R

I

V

A

V

L

I

L

L

G
|
G

A

A

G
|
G

A
|
A

A

A

R

R

A

A

M

I

A

A

Y

V

G

E

L

L

R

A

E

L

A

A

G

G

A

A

-

H

V

I

T

T

L

I

F

V

N
|
N

R
|
R

T

D

A

A

A

S

R
x
K

G

A

E

E

E

T

L

I

A

A

S

L

L

I

G

N

L

D

R

K

-

T

-

E

-

A

-

T

-

G

-

E

-

A

-

Q

-

A

F

W

G

S

G

G

A

K

L

F

S

S

D

-

F

-

R

L

A

P

A

T

D

G

F

T

D

D

L

I

L

L

A

I

N

N

A

A

T
|
T

A
x
S

A
x
I

G

G

F

L

R

G

A

D

P

P

D

N

V

A

N

A

P

P

V

P

A

V

-

E

-

M

G

G

Q

S

L

L

A

T

A

K

H

E

L

T

I

V

V

V

M

A

D

D

A
x
V

A

I

F

P

I

N

P

P

V

P

R

Q

S

T

K

R

L

F

I

L

R

K

D

D

A

A

A

K

E

A

L

L

G

G

C

C

R

T

T

T

I

L

D

D

G

G

T

L

R

G

M

M

M

L

L

V

H

N

Q
|
Q

A

G

C

V

A

I

Q

G

V

V

E

E

F

I

Y

W

T

L

G

G

C

-

A

-

R

R

A

T

P

L

I

D

E

S

A

A

M

V

E

M

A

A

A

Q

L

T

L

L

E

E

E

N

I

I

binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G128 (= G126), G130 (= G128), G131 (= G129), A132 (= A130), N152 (= N149), R153 (= R150), K157 (≠ R154), T195 (= T185), S196 (≠ A186), I197 (≠ A187), V222 (≠ A210), Q252 (= Q240)

Query Sequence

>RR42_RS09460 FitnessBrowser__Cup4G11:RR42_RS09460
MPRSIPTLCGSIMGEPFTFNVRIHNAAYRALEIDYTFVCFGVQDVPGAVQSIRALGVRGM
NVSMPHKQAVIPHLDHLDETARAIGAVNTINNVDGVLTGYNTDCIGAVRAFQEVTELQGK
RIALLGAGGAARAMAYGLREAGAAVTLFNRTAARGEELAASLGLRFGGALSDFRAADFDL
LANATAAGFRAPDVNPVAGQLAAHLIVMDAAFIPVRSKLIRDAAELGCRTIDGTRMMLHQ
ACAQVEFYTGCARAPIEAMEAALLEEIARQS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory