SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS10025 FitnessBrowser__Cup4G11:RR42_RS10025 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3zo7B Crystal structure of clcfe27a with substrate (see paper)
51% identity, 100% coverage: 1:91/91 of query aligns to 1:91/94 of 3zo7B

query
sites
3zo7B
M
 
M
L
 
L
Y
 
Y
H
 
L
V
 
V
Q
 
R
M
 
M
D
 
T
V
 
V
N
 
N
I
 
L
P
 
P
D
 
R
S
 
N
L
 
L
P
 
D
A
 
P
E
 
R
Q
 
E
A
 
E
D
 
E
A
 
R
I
 
L
K
 
K
A
 
A
A
 
S
E
x
A
K
 
K
A
 
A
R
 
R
A
 
S
I
 
R
E
 
T
I
 
L
Q
 
Q
K
 
E
S
 
Q
G
 
G
K
 
Q
W
 
W
P
 
R
H
 
Y
L
 
L
W
 
W
R
|
R
V
 
T
V
 
T
G
 
G
R
 
K
Y
 
Y
A
 
G
N
|
N
V
 
I
S
 
S
L
 
V
F
 
F
D
 
D
V
 
V
E
 
N
S
 
S
N
 
H
D
 
D
E
 
E
L
 
L
H
 
H
A
 
E
L
 
I
L
 
L
S
 
W
S
 
S
L
 
L
P
 
P
L
x
F
F
 
F
P
 
P
Y
 
Y
M
 
L
T
 
T
I
 
I
Q
 
D
V
 
V
T
 
E
P
 
P
L
 
L
A
 
S
Q
 
H
H
 
H
P
 
P
S
 
A
A
 
R
I
 
V

Query Sequence

>RR42_RS10025 FitnessBrowser__Cup4G11:RR42_RS10025
MLYHVQMDVNIPDSLPAEQADAIKAAEKARAIEIQKSGKWPHLWRVVGRYANVSLFDVES
NDELHALLSSLPLFPYMTIQVTPLAQHPSAI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory