SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing RR42_RS10615 FitnessBrowser__Cup4G11:RR42_RS10615 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
32% identity, 83% coverage: 36:319/341 of query aligns to 32:318/533 of O43175

query
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O43175

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T78 (≠ V82) binding
R135 (≠ P138) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
RI 155:156 (≠ QI 158:159) binding
D175 (vs. gap) binding
T207 (≠ A207) binding
CAR 234:236 (≠ ASR 234:236) binding
D260 (= D260) binding
V261 (= V261) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
HLGA 283:286 (≠ HIGG 284:287) binding

Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2 modified: N-acetylalanine
373 A → T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
377 G → S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987

P87228 Putative D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
33% identity, 82% coverage: 40:318/341 of query aligns to 86:378/466 of P87228

query
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P87228

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S87 (= S41) modified: Phosphoserine
S258 (≠ N210) modified: Phosphoserine

6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
32% identity, 81% coverage: 36:310/341 of query aligns to 28:305/305 of 6plfA

query
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6plfA

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binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: Y170 (vs. gap), D171 (vs. gap), P172 (vs. gap), L189 (= L193), H202 (≠ V206), T203 (≠ A207), P204 (= P208), L212 (≠ M216)

5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
30% identity, 81% coverage: 44:318/341 of query aligns to 38:322/334 of 5aovA

query
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active site: L100 (≠ F106), R241 (= R236), D265 (= D260), E270 (≠ M268), H288 (= H284)
binding glyoxylic acid: M52 (≠ Y58), L53 (≠ R59), L53 (≠ R59), Y74 (≠ C80), A75 (= A81), V76 (= V82), G77 (≠ D83), R241 (= R236), H288 (= H284)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (= V82), T104 (≠ V110), F158 (≠ Y156), G159 (= G157), R160 (≠ Q158), I161 (= I159), S180 (vs. gap), R181 (vs. gap), A211 (≠ V206), V212 (≠ A207), P213 (= P208), T218 (= T213), I239 (≠ A234), A240 (≠ S235), R241 (= R236), H288 (= H284), G290 (= G286)

7dkmA Phgdh covalently linked to oridonin (see paper)
31% identity, 80% coverage: 36:309/341 of query aligns to 28:304/306 of 7dkmA

query
sites
7dkmA

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V
x
T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F

N

M

S

P

L

A

S

V
x
A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I

L

G
|
G

Y

L

G

G

Q
x
R

I
|
I

G

G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-
x
Y

-
x
D

-
x
P

V
x
I

T

I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V
x
H

A
x
T

P
|
P

A

L

N

L

A

P

E

S

T
|
T

E

T

N

G

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A
x
C

S
x
A

R
|
R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H
|
H

I

L

G
|
G

G

A

L

S

T

T

L

K

A

E

A

A

T

Q

E

S

H

R

Q

C

A

G

L
x
E

E

E

T

I

V

A

E

V

Q

Q

L

F

R

V

A

D

L

M

V

V

Q

K

binding nicotinamide-adenine-dinucleotide: T74 (≠ V82), A102 (≠ V110), G148 (= G155), R151 (≠ Q158), I152 (= I159), Y170 (vs. gap), D171 (vs. gap), P172 (vs. gap), I173 (≠ V176), H202 (≠ V206), T203 (≠ A207), P204 (= P208), T209 (= T213), C230 (≠ A234), A231 (≠ S235), R232 (= R236), H279 (= H284), G281 (= G286)
binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: E293 (≠ L298)

Sites not aligning to the query:

binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: 14, 17, 18

6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
31% identity, 80% coverage: 36:309/341 of query aligns to 27:303/303 of 6plgA

query
sites
6plgA

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V

T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F

N

M

S

P

L

A

S

V

A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I

L

G

G

Y

L

G
|
G

Q
x
R

I

I

G

G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-

Y

-
x
D

-
x
P

V
x
I

T
x
I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V
x
H

A
x
T

P

P

A

L

N
x
L

A

P

E

S

T

T

E

T

N

G

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A

C

S

A

R

R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H

H

I

L

G

G

G

A

L

S

T

T

L

K

A

E

A

A

T

Q

E

S

H

R

Q

C

A

G

L

E

E

E

T

I

V

A

E

V

Q

Q

L

F

R

V

A

D

L

M

V

V

Q

K

binding (2S)-(4-{3-[(4,5-dichloro-1-methyl-1H-indole-2-carbonyl)amino]oxetan-3-yl}phenyl)(pyridin-3-yl)acetic acid: G149 (= G157), R150 (≠ Q158), D170 (vs. gap), P171 (vs. gap), I172 (≠ V176), I173 (≠ T177), H201 (≠ V206), T202 (≠ A207), L205 (≠ N210)

7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
32% identity, 80% coverage: 36:308/341 of query aligns to 27:302/302 of 7ewhA

query
sites
7ewhA

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V

T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F

N

M

S

P

L

A

S

V

A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I
x
L

G
|
G

Y
x
L

G
|
G

Q
x
R

I
|
I

G
|
G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-

Y

-
x
D

-

P

V

I

T

I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V
x
H

A
x
T

P
|
P

A

L

N

L

A

P

E

S

T

T

E

T

N

G

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A

C

S

A

R

R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H

H

I

L

G

G

G

A

L

S

T

T

L

K

A

E

A

A

T

Q

E

S

H

R

Q

C

A

G

L

E

E

E

T

I

V

A

E

V

Q

Q

L

F

R

V

A

D

L

M

V

V

binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ I154), G147 (= G155), L148 (≠ Y156), G149 (= G157), R150 (≠ Q158), I151 (= I159), G152 (= G160), D170 (vs. gap), H201 (≠ V206), T202 (≠ A207), P203 (= P208)

6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
32% identity, 80% coverage: 36:308/341 of query aligns to 27:302/302 of 6rihA

query
sites
6rihA

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V

T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F

N

M

S

P

L

A

S

V

A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I

L

G

G

Y

L

G
|
G

Q

R

I

I

G

G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-
x
Y

-
x
D

-
x
P

V
x
I

T
x
I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V

H

A
x
T

P
|
P

A

L

N

L

A

P

E

S

T

T

E

T

N

G

M
x
L

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A

C

S

A

R

R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H

H

I

L

G

G

G

A

L

S

T

T

L

K

A

E

A

A

T

Q

E

S

H

R

Q

C

A

G

L

E

E

E

T

I

V

A

E

V

Q

Q

L

F

R

V

A

D

L

M

V

V

binding ~{N}-cyclopropyl-2-methyl-5-phenyl-pyrazole-3-carboxamide: G149 (= G157), Y169 (vs. gap), D170 (vs. gap), P171 (vs. gap), I172 (≠ V176), I173 (≠ T177), T202 (≠ A207), P203 (= P208), L211 (≠ M216)

6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
32% identity, 80% coverage: 36:308/341 of query aligns to 24:299/299 of 6rj2A

query
sites
6rj2A

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V

T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F

N

M

S

P

L

A

S

V

A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I

L

G

G

Y

L

G
|
G

Q

R

I
|
I

G

G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-
x
Y

-
x
D

-
x
P

V
x
I

T
x
I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V
x
H

A
x
T

P

P

A

L

N

L

A

P

E

S

T

T

E

T

N

G

M
x
L

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A

C

S

A

R
|
R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H

H

I

L

G

G

G

A

L

S

T

T

L

K

A

E

A

A

T

Q

E

S

H

R

Q

C

A

G

L

E

E

E

T

I

V

A

E

V

Q

Q

L

F

R

V

A

D

L

M

V

V

binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G157), I148 (= I159), Y166 (vs. gap), D167 (vs. gap), P168 (vs. gap), I169 (≠ V176), I170 (≠ T177), H198 (≠ V206), T199 (≠ A207), L208 (≠ M216), R228 (= R236)

6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
32% identity, 75% coverage: 36:292/341 of query aligns to 26:285/297 of 6rj3A

query
sites
6rj3A

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V

T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F

N

M

S

P

L

A

S

V

A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I
x
L

G

G

Y

L

G

G

Q

R

I

I

G

G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-
x
Y

-
x
D

-
x
P

V
x
I

T
x
I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V
x
H

A
x
T

P
|
P

A

L

N

L

A

P

E

S

T

T

E

T

N

G

M
x
L

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A

C

S

A

R

R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H

H

I

L

G

G

G

A

L

S

T

T

L

K

A

E

A

A

binding 4-[(1~{R})-1-[(2-methyl-5-phenyl-pyrazol-3-yl)carbonylamino]ethyl]benzoic acid: L145 (≠ I154), Y168 (vs. gap), D169 (vs. gap), P170 (vs. gap), I171 (≠ V176), I172 (≠ T177), H200 (≠ V206), T201 (≠ A207), P202 (= P208), L210 (≠ M216)

6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
32% identity, 75% coverage: 36:292/341 of query aligns to 27:286/301 of 6rj5A

query
sites
6rj5A

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V

T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F

N

M

S

P

L

A

S

V

A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I
x
L

G

G

Y

L

G

G

Q

R

I

I

G

G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-
x
Y

-
x
D

-
x
P

V

I

T
x
I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V
x
H

A
x
T

P
|
P

A

L

N

L

A

P

E

S

T

T

E

T

N

G

M
x
L

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A

C

S

A

R

R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H

H

I

L

G

G

G

A

L

S

T

T

L

K

A

E

A

A

binding 2-methyl-~{N}-[(1~{R})-1-[4-(methylsulfonylcarbamoyl)phenyl]ethyl]-5-phenyl-pyrazole-3-carboxamide: L146 (≠ I154), Y169 (vs. gap), D170 (vs. gap), P171 (vs. gap), I173 (≠ T177), H201 (≠ V206), T202 (≠ A207), P203 (= P208), L211 (≠ M216)

6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
32% identity, 75% coverage: 36:292/341 of query aligns to 26:285/299 of 6cwaA

query
sites
6cwaA

E

E

A

K

R

Q

E

N

L

L

S

S

T

K

P

E

E

E

L

L

I

I

A

A

A

E

A

L

H

Q

G

D

C

C

D

E

A

G

L

L

I

I

A

V

Y

R

R

S

Q

A

T

T

P

K

G

V

P

T

E

A

A

D

L

V

F

I

A

N

G

A

L

A

P

E

A

K

L

L

A

Q

A

V

F

V

I

G

R

R

C

A

A

G

V

T

D

G

I

V

S

D

T

N

I

V

D

D

V

L

P

E

A

A

S

T

R

R

H

K

G

G

V

I

L

L

I

V

T

M

Q

N

A

T

S

P

A

N

G

G

F
x
N

M

S

P

L

A

S

V
x
A

S

A

E

E

W

L

A

T

I

C

G

G

A

M

M

I

V

M

D

C

L

L

A

A

R

R

G

Q

T

I

S

P

R

Q

Y

A

A

T

A

A

A

S

Y

M

H

K

R

D

G

G

Q

K

-

W

P

E

P

R

A

K

P

K

V

F

M

M

G

G

R

T

E

E

L

L

R

N

G

G

S

K

V

T

L

L

G

G

V

I

I

L

G

G

Y

L

G

G

Q
x
R

I
|
I

G

G

R

R

Y

E

L

V

C

A

E

T

L

R

A

M

Q

Q

A

S

F

F

G

G

M

M

R

K

I

T

L

I

-

G

-
x
Y

-
x
D

-
x
P

V
x
I

T

I

T

S

P

P

G

-

K

E

I

V

P

S

A

A

Q

S

P

F

A

G

L

V

R

Q

Q

Q

V

L

P

P

L

L

P

E

Q

E

L

I

L

W

A

P

E

L

A

C

D

D

F

F

V

I

V

T

C

V

V
x
H

A
x
T

P
|
P

A

L

N

L

A

P

E

S

T
|
T

E

T

N

G

M

L

N

N

A

D

Q

N

A

T

F

F

A

A

A

Q

M

C

K

K

P

K

D

G

A

V

Y

R

F

V

I

V

N

N

A
x
C

S
x
A

R
|
R

G

G

E

G

L

I

V

V

D

D

E

E

P

G

A

A

L

L

H

R

A

A

L

L

E

Q

S

S

G

G

H

Q

L

C

G

A

G

G

C

A

A

A

L

L

D

D

V

V

G

-

R

-

A

F

P

T

D

E

Q

E

M

P

P

P

-

R

V

D

L

R

G

A

L

L

A

V

R

D

H

H

P

E

N

N

V

V

I

I

A

S

T

C

P

P

H
|
H

I

L

G
|
G

G

A

L

S

T

T

L

K

A

E

A

A

binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (≠ F106), A100 (≠ V110), R149 (≠ Q158), I150 (= I159), Y168 (vs. gap), D169 (vs. gap), P170 (vs. gap), I171 (≠ V176), H200 (≠ V206), T201 (≠ A207), P202 (= P208), T207 (= T213), C228 (≠ A234), A229 (≠ S235), R230 (= R236), H277 (= H284), G279 (= G286)

2p9eA Crystal structure of g336v mutant of e.Coli phosphoglycerate dehydrogenase (see paper)
39% identity, 69% coverage: 71:304/341 of query aligns to 72:308/406 of 2p9eA

query
sites
2p9eA

L

L

P

V

A

A

L

I

A

G

A

A

F

F

I

-

R

-

C

-

A

A

V

I

D

G

I

T

S

N

T

Q

I

V

D

D

V

L

P

D

A

A

S

A

R

K

H

R

G

G

V

I

L

P

I

V

T

F

Q

N

A

A

S

P

A

F

G

S

F
x
N

M

T

P

R

A

S

V

V

S

A

E

E

W

L

A

V

I

I

G

G

A

E

M

L

V

L

D

L

L

L

A

L

R

R

G

G

T

V

S

P

R

E

Y

A

A

N

A

A

A

K

Y

A

H

H

R

R

G

G

Q

V

P

W

P

N

A

K

P

L

V

A

M

A

G

G

R

S

-

F

E

E

L

A

R

R

G

G

S

K

V

K

L

L

G

G

V

I

I

I

G

G

Y

Y

G
|
G

Q
x
H

I
|
I

G

G

R

T

Y

Q

L

L

C

G

E

I

L

L

A

A

Q

E

A

S

F

L

G

G

M

M

R

Y

I

V

-

Y

L

F

V
x
Y

T
x
D

T
x
I

P

E

G

N

K

K

I

L

P

P

A

L

Q

G

P

N

A

A

L

T

R

Q

Q

V

V

Q

P

H

L

L

P

S

Q

D

L

L

A

N

E

M

A

S

D

D

F

V

V

V

V

S

C

L

V
x
H

A
x
V

P
|
P

A

E

N

N

A

P

E
x
S

T

T

E

K

N

N

M

M

N

G

A

A

Q

K

A

E

F

I

A

S

A

L

M

M

K

K

P

P

D

G

A

S

Y

L

F

L

I

I

N

N

A
|
A

S
|
S

R
|
R

G

G

E

T

L

V

V

V

D

D

E

I

P

P

A

A

L

L

L

A

H

D

A

A

L

L

E

A

S

S

G

K

H

H

L

L

G

A

G

G

C

A

A

A

L

I

D
|
D

V

V

-

F

-

P

-

T

G
x
E

R

P

A

A

P

T

D

N

Q

S

M

D

P

P

V

F

L

T

G

S

-

P

L

L

A

A

R

E

H

F

P

D

N

N

V

V

I

L

A

L

T

T

P

P

H
|
H

I

I

G
|
G

G

G

L

S

T

T

L

Q

A

E

A

A

T

Q

E

E

H

N

Q

I

A

G

L

L

E

E

T

V

V

A

E

G

Q

K

L

L

active site: N104 (≠ F106), R236 (= R236), D260 (= D260), E265 (≠ G262), H288 (= H284)
binding 1,4-dihydronicotinamide adenine dinucleotide: G156 (= G157), H157 (≠ Q158), I158 (= I159), Y176 (≠ V176), D177 (≠ T177), I178 (≠ T178), H206 (≠ V206), V207 (≠ A207), P208 (= P208), S212 (≠ E212), A234 (= A234), S235 (= S235), R236 (= R236), H288 (= H284), G290 (= G286)

1ybaA The active form of phosphoglycerate dehydrogenase (see paper)
38% identity, 67% coverage: 78:304/341 of query aligns to 75:308/406 of 1ybaA

query
sites
1ybaA

I

I

R

G

C

C

-

F

A
x
C

V
x
I

D
x
G

I

T

S
x
N

T

Q

I

V

D

D

V

L

P

D

A

A

S

A

R

K

H

R

G

G

V

I

L

P

I

V

T

F

Q

N

A

A

S

P

A
x
F

G

S

F
x
N

M

T

P

R

A

S

V
|
V

S

A

E

E

W

L

A

V

I

I

G

G

A

E

M

L

V

L

D

L

L

L

A

L

R

R

G

G

T

V

S

P

R

E

Y

A

A

N

A

A

A

K

Y

A

H

H

R

R

G

G

Q

V

P

W

P

N

A

K

P

L

V

A

M

A

G

G

R

S

-

F

E

E

L

A

R

R

G

G

S

K

V

K

L

L

G

G

V

I

I

I

G
|
G

Y

Y

G
|
G

Q
x
H

I
|
I

G

G

R

T

Y

Q

L

L

C

G

E

I

L

L

A

A

Q

E

A

S

F

L

G

G

M

M

R

Y

I

V

-

Y

L

F

V
x
Y

T
x
D

T
x
I

P

E

G

N

K
|
K

I

L

P

P

A

L

Q

G

P

N

A

A

L

T

R

Q

Q

V

V

Q

P

H

L

L

P

S

Q

D

L

L

A

N

E

M

A

S

D

D

F

V

V

V

V

S

C

L

V
x
H

A
x
V

P
|
P

A

E

N

N

A

P

E

S

T

T

E

K

N

N

M

M

N

G

A

A

Q

K

A

E

F

I

A

S

A

L

M

M

K

K

P

P

D

G

A

S

Y

L

F

L

I

I

N

N

A
|
A

S
|
S

R
|
R

G

G

E

T

L

V

V

V

D

D

E

I

P

P

A

A

L

L

L

C

H

D

A

A

L

L

E

A

S

S

G

K

H

H

L

L

G

A

G

G

C

A

A

A

L

I

D
|
D

V

V

-

F

-

P

-

T

G
x
E

R

P

A

A

P

T

D

N

Q

S

M

D

P

P

V

F

L

T

G

S

-

P

L

L

A

C

R

E

H

F

P

D

N

N

V

V

I

L

A

L

T

T

P

P

H
|
H

I

I

G
|
G

G

G

L

S

T

T

L

Q

A

E

A

A

T

Q

E

E

H

N

Q

I

A

G

L

L

E

E

T

V

V

A

E

G

Q

K

L

L

active site: N104 (≠ F106), R236 (= R236), D260 (= D260), E265 (≠ G262), H288 (= H284)
binding 2-oxoglutaric acid: C79 (≠ A81), I80 (≠ V82)
binding nicotinamide-adenine-dinucleotide: I80 (≠ V82), F102 (≠ A104), V108 (= V110), G154 (= G155), G156 (= G157), H157 (≠ Q158), I158 (= I159), Y176 (≠ V176), D177 (≠ T177), I178 (≠ T178), K181 (= K181), H206 (≠ V206), V207 (≠ A207), P208 (= P208), A234 (= A234), S235 (= S235), R236 (= R236), H288 (= H284), G290 (= G286)
binding phosphate ion: G81 (≠ D83), N83 (≠ S85)

Sites not aligning to the query:

binding 2-oxoglutaric acid: 56, 57

1psdA The allosteric ligand site in the vmax-type cooperative enzyme phosphoglycerate dehydrogenase (see paper)
38% identity, 67% coverage: 78:304/341 of query aligns to 73:306/404 of 1psdA

query
sites
1psdA

I

I

R

G

C

C

-

F

A

C

V

I

D

G

I

T

S

N

T

Q

I

V

D

D

V

L

P

D

A

A

S

A

R

K

H

R

G

G

V

I

L

P

I

V

T

F

Q

N

A

A

S

P

A

F

G

S

F
x
N

M

T

P

R

A

S

V

V

S

A

E

E

W

L

A

V

I

I

G

G

A

E

M

L

V

L

D

L

L

L

A

L

R

R

G

G

T

V

S

P

R

E

Y

A

A

N

A

A

A

K

Y

A

H

H

R

R

G

G

Q

V

P

W

P

N

A

K

P

L

V

A

M

A

G

G

R

S

-

F

E

E

L

A

R

R

G

G

S

K

V

K

L

L

G

G

V

I

I

I

G

G

Y

Y

G

G

Q
x
H

I
|
I

G

G

R

T

Y

Q

L

L

C

G

E

I

L

L

A

A

Q

E

A

S

F

L

G

G

M

M

R

Y

I

V

-

Y

L

F

V

Y

T
x
D

T
x
I

P

E

G

N

K
|
K

I

L

P

P

A

L

Q

G

P

N

A

A

L

T

R

Q

Q

V

V

Q

P

H

L

L

P

S

Q

D

L

L

A

N

E

M

A

S

D

D

F

V

V

V

V

S

C

L

V
x
H

A
x
V

P
|
P

A

E

N

N

A

P

E

S

T

T

E

K

N

N

M

M

N

G

A

A

Q

K

A

E

F

I

A

S

A

L

M

M

K

K

P

P

D

G

A

S

Y

L

F

L

I

I

N

N

A
|
A

S
|
S

R
|
R

G

G

E

T

L

V

V

V

D

D

E

I

P

P

A

A

L

L

L

C

H

D

A

A

L

L

E

A

S

S

G

K

H

H

L

L

G

A

G

G

C

A

A

A

L

I

D
|
D

V

V

-

F

-

P

-

T

G
x
E

R

P

A

A

P

T

D

N

Q

S

M

D

P

P

V

F

L

T

G

S

-

P

L

L

A

C

R

E

H

F

P

D

N

N

V

V

I

L

A

L

T

T

P

P

H
|
H

I

I

G

G

L

S

T

T

L

Q

A

E

A

A

T

Q

E

E

H

N

Q

I

A

G

L

L

E

E

T

V

V

A

E

G

Q

K

L

L

active site: N102 (≠ F106), R234 (= R236), D258 (= D260), E263 (≠ G262), H286 (= H284)
binding nicotinamide-adenine-dinucleotide: N102 (≠ F106), H155 (≠ Q158), I156 (= I159), D175 (≠ T177), I176 (≠ T178), K179 (= K181), H204 (≠ V206), V205 (≠ A207), P206 (= P208), A232 (= A234), S233 (= S235), R234 (= R236), H286 (= H284)

Sites not aligning to the query:

binding serine: 338, 340, 341, 344

P0A9T0 D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli (strain K12) (see 2 papers)
38% identity, 67% coverage: 78:304/341 of query aligns to 79:312/410 of P0A9T0

query
sites
P0A9T0

I

I

R

G

C

C

-

F

A

C

V

I

D

G

I

T

S

N

T

Q

I

V

D

D

V

L

P

D

A

A

S

A

R

K

H

R

G

G

V

I

L

P

I

V

T

F

Q

N

A

A

S

P

A

F

G

S

F

N

M

T

P

R

A

S

V

V

S

A

E

E

W

L

A

V

I

I

G

G

A

E

M

L

V

L

D

L

L

L

A

L

R

R

G

G

T

V

S

P

R

E

Y

A

A

N

A

A

A

K

Y

A

H

H

R

R

G

G

Q

V

P

W

P

N

A

K

P

L

V

A

M

A

G

G

R

S

-

F

E

E

L

A

R

R

G

G

S

K

V

K

L

L

G

G

V

I

I

I

G

G

Y

Y

G

G

Q
x
H

I
|
I

G

G

R

T

Y

Q

L

L

C

G

E

I

L

L

A

A

Q

E

A

S

F

L

G

G

M

M

R

Y

I

V

-

Y

L

F

V

Y

T
x
D

T

I

P

E

G

N

K

K

I

L

P

P

A

L

Q

G

P

N

A

A

L

T

R

Q

Q

V

V

Q

P

H

L

L

P

S

Q

D

L

L

A

N

E

M

A

S

D

D

F

V

V

V

V

S

C

L

V

H

A

V

P

P

A

E

N

N

A

P

E

S

T

T

E

K

N

N

M

M

N

G

A

A

Q

K

A

E

F

I

A

S

A

L

M

M

K

K

P

P

D

G

A

S

Y

L

F

L

I

I

N

N

A
|
A

S
|
S

R
|
R

G

G

E

T

L

V

V

V

D

D

E

I

P

P

A

A

L

L

L

C

H

D

A

A

L

L

E

A

S

S

G

K

H

H

L

L

G

A

G

G

C

A

A

A

L

I

D
|
D

V

V

-

F

-

P

-

T

G

E

R

P

A

A

P

T

D

N

Q

S

M

D

P

P

V

F

L

T

G

S

-

P

L

L

A

C

R

E

H

F

P

D

N

N

V

V

I

L

A

L

T

T

P

P

H
|
H

I
|
I

G
|
G

L

S

T

T

L

Q

A

E

A

A

T

Q

E

E

H

N

Q

I

A

G

L

L

E

E

T

V

V

A

E

G

Q

K

L

L

HI 161:162 (≠ QI 158:159) binding
D181 (≠ T177) binding
ASR 238:240 (= ASR 234:236) binding
D264 (= D260) binding
HIGG 292:295 (= HIGG 284:287) binding

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

6biiA Crystal structure of pyrococcus yayanosii glyoxylate hydroxypyruvate reductase in complex with NADP and malonate (re-refinement of 5aow) (see paper)
31% identity, 80% coverage: 45:318/341 of query aligns to 38:321/332 of 6biiA

query
sites
6biiA

L

L

I

L

A

E

A

K

A

V

H

K

G

D

C

V

D

D

A

A

L

L

I

V

A

T

Y

M

R

L

Q

S

T

E

P

K

G

I

P

D

E

R

A

E

L

V

F

F

A

D

G

A

L

A

P

P

A

R

L

L

A

R

A

I

F

V

I

A

R

N

C

Y

A

A

V
|
V

D

G

I

Y

S

D

T

N

I

I

D

D

V

I

P

E

A

E

A

A

S

T

R

K

H

R

G

G

V

I

L

Y

I

V

T

T

Q

N

A

T

S

P

A

D

G

V

F
x
L

M

T

P

D

A

A

V
x
T

S

A

E

D

W

L

A

A

I

W

G

A

A

L

M

L

V

L

D

A

L

A

A

A

R

R

G

H

T

V

-

V

-

K

-

G

-

D

-

K

-

F

-

V

-

R

-

S

-

G

-

E

-

W

S

K

R

R

Y

R

A

G

A

I

A

A

Y

W

H

H

R

-

G

-

Q

-

P

-

P

P

A

K

P

M

V

F

M

L

G

G

R

Y

E

D

L

V

R

Y

G

G

S

K

V

T

L

I

G

G

V

I

I

V

G
|
G

Y
x
F

G
|
G

Q
x
R

I
|
I

G

G

R

Q

Y

A

L

I

C

A

E

K

L

R

A

A

Q

K

A

G

F

F

G

G

M

M

R

R

I

I

L

L

V

Y

T

T

T
x
A

P
x
R

G
x
S

K

R

I
x
K

P

P

-

E

A

A

Q

E

P

K

A

E

L

L

-

G

-

A

R

E

Q

F

V

K

P

P

L

L

P

E

Q

E

L

L

A

R

E

E

A

S

D

D

F

F

V

V

C

L

V

A

A
x
V

P
|
P

A

L

N

T

A

K

E
|
E

T
|
T

E

Y

N

H

M

M

M

I

N

N

A

E

Q

E

A

R

F

L

A

R

A

L

M

M

K

K

P

P

D

T

A

A

Y

V

F

L

I

V

N

N

A
x
V

S
x
A

R
|
R

G

G

E

K

L

V

V

V

D

D

E

T

P

K

A

A

L

L

L

I

H

R

A

A

L

L

E

K

S

E

G

G

H

W

L

I

G

A

C

A

A

G

L

L

D
|
D

V

V

G

F

R

-

A

-

P

-

D

E

Q

E

M
x
E

P

P

V

Y

L

Y

G

D

-

E

L

L

A

F

R

A

H

L

P

D

N

N

V

V

I

V

A

L

T

T

P

P

H
|
H

I

I

G
|
G

G

S

L

A

T

T

L

F

A

G

A

A

T

R

E

E

H

G

Q

M

A

A

L

E

E

L

T

V

V

A

E

K

Q

N

L

L

R

I

A

A

L

F

V

K

Q

N

G

G

R

E

L

V

P

P

D

P

G

T

A

L

V

V

N

N

active site: L99 (≠ F106), R240 (= R236), D264 (= D260), E269 (≠ M268), H287 (= H284)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V75 (= V82), T103 (≠ V110), G156 (= G155), F157 (≠ Y156), G158 (= G157), R159 (≠ Q158), I160 (= I159), A179 (≠ T178), R180 (≠ P179), S181 (≠ G180), K183 (≠ I182), V211 (≠ A207), P212 (= P208), E216 (= E212), T217 (= T213), V238 (≠ A234), A239 (≠ S235), R240 (= R236), D264 (= D260), H287 (= H284), G289 (= G286)

3kb6B Crystal structure of d-lactate dehydrogenase from aquifex aeolicus complexed with NAD and lactic acid (see paper)
28% identity, 91% coverage: 1:312/341 of query aligns to 1:322/334 of 3kb6B

query
sites
3kb6B

M

M

K

N

T

V

V

L

F

F

V

T

S

S

H

V

P

P

T

Q

D

E

K

D

L

V

R

P

H

F

Y

Y

F

Q

G

E

N

A

Q

L

A

K

I

D

T

L

A

S

L

L

Q

K

A

I

F

Y

A

T

E

T

V

D

R

V

L

S

N

K

T

V

E

P

A

E

R

N

E

E

L

L

S

K

T

K

P

A

E

E

L

L

I

I

A

S

A

-

H

-

G

-

C

-

D

-

A

-

L

V

I
x
F

A

V

Y

Y

R

D

Q

K

T

L

P

T

G

-

P

-

E

E

A

E

L

L

F

L

A

S

G

K

L

M

P

P

A

R

L

L

A

K

A

L

F

I

I

H

R

T

C

R

A
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active site: S97 (≠ F106), R231 (= R236), D255 (= D260), E260 (vs. gap), H294 (= H284)
binding lactic acid: F49 (≠ I56), S72 (≠ A81), V73 (= V82), G74 (≠ D83), Y96 (≠ G105), R231 (= R236), H294 (= H284)
binding nicotinamide-adenine-dinucleotide: V73 (= V82), Y96 (≠ G105), V101 (= V110), G150 (= G157), R151 (≠ Q158), I152 (= I159), D171 (≠ T178), V172 (≠ I182), P203 (= P208), T229 (≠ A234), A230 (≠ S235), R231 (= R236), H294 (= H284), A296 (≠ G286), Y297 (≠ G287)

1sc6D Crystal structure of w139g d-3-phosphoglycerate dehydrogenase complexed with NAD+ (see paper)
38% identity, 69% coverage: 71:304/341 of query aligns to 70:286/384 of 1sc6D

query
sites
1sc6D

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active site: N102 (≠ F106), R228 (= R236), D252 (= D260)
binding nicotinamide-adenine-dinucleotide: P99 (≠ S103), F100 (≠ A104), N102 (≠ F106), T103 (≠ M107), G146 (= G155), G148 (= G157), H149 (≠ Q158), I150 (= I159), Y168 (≠ V176), D169 (≠ T177), I170 (≠ T178), H198 (≠ V206), V199 (≠ A207), P200 (= P208), S204 (≠ E212), T205 (= T213), S227 (= S235)

6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
31% identity, 76% coverage: 45:304/341 of query aligns to 31:289/292 of 6plfB

query
sites
6plfB

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binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: R141 (≠ Q158), Y160 (vs. gap), D161 (vs. gap), P162 (vs. gap), I164 (≠ T177), L179 (= L193), T193 (≠ A207), P194 (= P208), S198 (≠ E212), L202 (≠ M216)

Query Sequence

>RR42_RS10615 FitnessBrowser__Cup4G11:RR42_RS10615
MKTVFVSHPTDKLRHYFGNQAITALQAFAEVRLNTEARELSTPELIAAAHGCDALIAYRQ
TPGPEALFAGLPALAAFIRCAVDISTIDVPAASRHGVLITQASAGFMPAVSEWAIGAMVD
LARGTSRYAAAYHRGQPPAPVMGRELRGSVLGVIGYGQIGRYLCELAQAFGMRILVTTPG
KIPAQPALRQVPLPQLLAEADFVVCVAPANAETENMMNAQAFAAMKPDAYFINASRGELV
DEPALLHALESGHLGGCALDVGRAPDQMPVLGLARHPNVIATPHIGGLTLAATEHQALET
VEQLRALVQGRLPDGAVNAARATRLQRWGIHLTGLENAEAR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory