Comparing RR42_RS11950 FitnessBrowser__Cup4G11:RR42_RS11950 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4o23A Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from neisseria meningitidis mc58 (see paper)
62% identity, 99% coverage: 4:383/383 of query aligns to 5:376/376 of 4o23A
4pqaA Crystal structure of succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 in complex with the inhibitor captopril (see paper)
62% identity, 99% coverage: 4:382/383 of query aligns to 5:375/375 of 4pqaA
7lgpB Dape enzyme from shigella flexneri
58% identity, 99% coverage: 3:383/383 of query aligns to 6:377/377 of 7lgpB
7t1qA Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
60% identity, 96% coverage: 16:383/383 of query aligns to 17:376/377 of 7t1qA
5vo3A Crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) (see paper)
51% identity, 99% coverage: 5:382/383 of query aligns to 10:379/380 of 5vo3A
P44514 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 3 papers)
51% identity, 99% coverage: 5:382/383 of query aligns to 6:375/377 of P44514
4op4B Crystal structure of the catalytic domain of dape protein from v.Cholerea in the zn bound form (see paper)
59% identity, 49% coverage: 2:187/383 of query aligns to 3:180/265 of 4op4B
Sites not aligning to the query:
4h2kA Crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae (see paper)
55% identity, 49% coverage: 5:193/383 of query aligns to 8:186/258 of 4h2kA
Sites not aligning to the query:
7uoiA Crystallographic structure of dape from enterococcus faecium
27% identity, 99% coverage: 5:383/383 of query aligns to 11:383/383 of 7uoiA
7rsfA Acetylornithine deacetylase from escherichia coli
26% identity, 99% coverage: 1:381/383 of query aligns to 2:377/380 of 7rsfA
3pfoA Crystal structure of a putative acetylornithine deacetylase (rpa2325) from rhodopseudomonas palustris cga009 at 1.90 a resolution
26% identity, 78% coverage: 66:364/383 of query aligns to 96:403/426 of 3pfoA
Q03154 Aminoacylase-1; ACY-1; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14 from Homo sapiens (Human) (see 6 papers)
25% identity, 99% coverage: 2:381/383 of query aligns to 10:398/408 of Q03154
P37111 Aminoacylase-1; ACY-1; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14 from Sus scrofa (Pig) (see paper)
25% identity, 99% coverage: 2:381/383 of query aligns to 10:397/407 of P37111
Sites not aligning to the query:
Q96KN2 Beta-Ala-His dipeptidase; CNDP dipeptidase 1; Carnosine dipeptidase 1; Glutamate carboxypeptidase-like protein 2; Serum carnosinase; EC 3.4.13.20 from Homo sapiens (Human) (see 4 papers)
31% identity, 33% coverage: 69:196/383 of query aligns to 127:254/507 of Q96KN2
Sites not aligning to the query:
2pokA Crystal structure of a m20 family metallo peptidase from streptococcus pneumoniae
37% identity, 22% coverage: 65:147/383 of query aligns to 82:164/458 of 2pokA
Sites not aligning to the query:
3dljA Crystal structure of human carnosine dipeptidase 1
34% identity, 27% coverage: 69:170/383 of query aligns to 96:197/471 of 3dljA
Sites not aligning to the query:
Q8C165 N-fatty-acyl-amino acid synthase/hydrolase PM20D1; Peptidase M20 domain-containing protein 1; PM20D1; EC 3.5.1.114; EC 3.5.1.14 from Mus musculus (Mouse) (see paper)
30% identity, 38% coverage: 62:205/383 of query aligns to 111:262/503 of Q8C165
Sites not aligning to the query:
Q96KP4 Cytosolic non-specific dipeptidase; CNDP dipeptidase 2; Glutamate carboxypeptidase-like protein 1; Peptidase A; Threonyl dipeptidase; EC 3.4.13.18 from Homo sapiens (Human)
26% identity, 69% coverage: 67:332/383 of query aligns to 92:417/475 of Q96KP4
Sites not aligning to the query:
1q7lA Zn-binding domain of the t347g mutant of human aminoacylase-i (see paper)
29% identity, 46% coverage: 2:177/383 of query aligns to 4:180/192 of 1q7lA
Q9D1A2 Cytosolic non-specific dipeptidase; CNDP dipeptidase 2; Glutamate carboxypeptidase-like protein 1; Threonyl dipeptidase; EC 3.4.13.18 from Mus musculus (Mouse) (see 2 papers)
22% identity, 57% coverage: 67:285/383 of query aligns to 92:363/475 of Q9D1A2
Sites not aligning to the query:
>RR42_RS11950 FitnessBrowser__Cup4G11:RR42_RS11950
MNPTLALTEDLIRRRSVTPADEGCQAVLETRLKALGFACEAIVSGPDDFRVTNLWAVKRG
TRGQDGKLLAFAGHTDVVPTGPLEQWGSDPFLPSHRDGKLYGRGAADMKTSIAGFVVAVE
EFVQAHPDHAGSIAFLITSDEEGPAHDGTVKVVQALKARGERLDYCVIGEPTSVDTLGDM
VKNGRRGSLSGKLTVKGVQGHIAYPHLARNPIHLAAPALTDLVNERWDEGNEYFPATSWQ
MSNIHGGTGATNVIPGHVTVDFNFRFSTASTPDGLKARVHAILERHQLDYDLDWTLGGEP
FLTARGDLSEALAGAIAAETGVKTELSTTGGTSDGRFIAKICPQVIEFGPPNASIHKIDE
HVEVRFIEPLKNIYRGVLERLIA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory