SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS12215 FitnessBrowser__Cup4G11:RR42_RS12215 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
44% identity, 79% coverage: 28:158/165 of query aligns to 25:155/156 of 1nxjA

query
sites
1nxjA
F
|
F
Q
 
R
H
 
Q
F
 
F
G
 
G
K
 
G
R
 
R
A
 
S
A
 
Q
F
 
F
S
 
A
G
 
G
P
 
P
A
 
I
A
 
S
T
 
T
L
 
V
K
 
R
V
 
C
F
 
F
E
 
Q
D
 
D
N
 
N
S
 
A
L
 
L
V
 
L
R
 
K
E
 
S
T
 
V
V
 
L
E
 
S
S
 
Q
P
 
P
G
 
S
N
 
A
G
 
G
R
 
G
V
 
V
L
 
L
V
 
V
V
 
I
D
 
D
G
 
G
G
 
A
G
 
G
S
 
S
L
 
L
R
 
H
C
 
T
A
 
A
L
 
L
V
 
V
G
 
G
G
 
D
N
 
V
L
 
I
G
 
A
V
 
E
L
 
L
A
 
A
E
 
R
K
 
S
N
 
T
G
 
G
W
 
W
V
 
T
G
 
G
I
 
L
L
 
I
V
 
V
N
 
H
G
 
G
C
 
A
V
 
V
R
 
R
D
 
D
S
 
A
G
 
A
E
 
A
L
 
L
A
 
R
V
 
G
C
 
I
D
 
D
I
 
I
G
 
G
V
 
I
R
 
K
A
 
A
L
 
L
A
 
G
L
 
T
H
 
N
P
 
P
Q
 
R
K
 
K
S
 
S
Q
 
T
K
 
K
R
 
T
N
 
G
V
 
A
G
 
G
E
 
E
R
 
R
E
 
D
V
 
V
T
 
E
V
 
I
Q
 
T
M
 
L
P
 
G
G
 
G
A
 
V
V
 
T
V
 
F
R
 
V
P
 
P
G
 
G
N
 
D
W
 
I
I
 
A
Y
 
Y
A
 
S
D
 
D
A
x
D
D
 
D
G
 
G
V
 
I
L
 
I
V
 
V

Sites not aligning to the query:

2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
39% identity, 99% coverage: 2:164/165 of query aligns to 1:158/158 of 2yjvC

query
sites
2yjvC
S
 
K
F
 
Y
A
 
D
T
 
T
T
 
S
D
 
E
L
 
L
C
 
C
D
 
D
A
 
I
N
 
Y
E
 
Q
A
 
E
R
 
-
L
 
-
A
 
-
D
 
-
G
 
-
S
 
D
L
 
V
R
 
N
V
 
V
L
 
V
S
 
E
P
 
P
V
 
L
F
 
F
Q
 
S
H
 
N
F
 
F
G
 
G
K
 
G
R
 
R
A
 
A
A
 
S
F
 
F
S
 
G
G
 
G
P
 
Q
A
 
I
A
 
I
T
 
T
L
 
V
K
 
K
V
 
C
F
 
F
E
 
E
D
 
D
N
 
N
S
 
G
L
 
L
V
 
L
R
 
Y
E
 
D
T
 
L
V
 
L
E
 
E
S
 
Q
P
 
N
G
 
G
N
 
R
G
 
G
R
 
R
V
 
V
L
 
L
V
 
V
V
 
V
D
 
D
G
 
G
G
 
G
G
 
G
S
 
S
L
 
V
R
 
R
C
 
R
A
 
A
L
 
L
V
 
V
G
 
D
G
 
A
N
 
E
L
 
L
G
 
A
V
 
R
L
 
L
A
 
A
E
 
V
K
 
Q
N
 
N
G
 
E
W
 
W
V
 
E
G
 
G
I
 
L
L
 
V
V
 
I
N
 
Y
G
 
G
C
 
A
V
 
V
R
 
R
D
 
Q
S
 
V
G
 
D
E
 
D
L
 
L
A
 
E
V
 
E
C
 
L
D
 
D
I
 
I
G
 
G
V
 
I
R
 
Q
A
 
A
L
 
M
A
 
A
L
 
A
H
 
I
P
 
P
Q
 
V
K
 
G
S
 
A
Q
 
A
K
 
G
R
 
E
N
 
G
V
 
I
G
 
G
E
|
E
R
x
S
E
x
D
V
 
V
T
 
R
V
 
V
Q
 
N
M
 
F
P
 
G
G
 
G
A
 
V
V
 
T
V
 
F
R
 
F
P
x
S
G
 
G
N
 
D
W
 
H
I
 
L
Y
 
Y
A
 
A
D
 
D
A
 
N
D
 
T
G
 
G
V
 
I
L
 
I
V
 
L
A
 
S
D
 
E
T
 
D
R
 
P
L
 
L
E
 
D

Query Sequence

>RR42_RS12215 FitnessBrowser__Cup4G11:RR42_RS12215
MSFATTDLCDANEARLADGSLRVLSPVFQHFGKRAAFSGPAATLKVFEDNSLVRETVESP
GNGRVLVVDGGGSLRCALVGGNLGVLAEKNGWVGILVNGCVRDSGELAVCDIGVRALALH
PQKSQKRNVGEREVTVQMPGAVVRPGNWIYADADGVLVADTRLEG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory