Comparing RR42_RS13765 FitnessBrowser__Cup4G11:RR42_RS13765 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 3 hits to proteins with known functional sites (download)
Q7LYW7 Trehalose/maltose-binding protein MalE; TMBP from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see paper)
24% identity, 71% coverage: 110:516/576 of query aligns to 93:446/450 of Q7LYW7
Sites not aligning to the query:
1eu8A Structure of trehalose maltose binding protein from thermococcus litoralis (see paper)
24% identity, 71% coverage: 110:516/576 of query aligns to 52:405/407 of 1eu8A
Sites not aligning to the query:
5iaiA Crystal structure of abc transporter solute binding protein arad_9887 from agrobacterium radiobacter k84, target efi-510945 in complex with ribitol
21% identity, 74% coverage: 84:511/576 of query aligns to 24:394/399 of 5iaiA
Sites not aligning to the query:
>RR42_RS13765 FitnessBrowser__Cup4G11:RR42_RS13765
MKLGMTALACAAALACGHAAWAGEAEAKKWVDSEFQPSSLAKDKQLAEMKWFMDAAAKLK
AKGVTQISVVSETLTTHEYESKTLAKAFEEITGIKVNHDIIQEGDVVEKLQTSMQSGKSI
YDGWISDSDLIGTHYRYGAILPLSDYMSGAGKEWTNPGLDVKDFIGTKFTTAPDGKLYQL
PDQQFANLYWFRADWFARKDLQDKFKAKYGYDLGVPTNWSAYEDIANFFSNDVKELDGKK
VYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGMPVDEWGIRVGADKCTPEGASVAR
GGAANSPAAVYALTKYIDWMKKYAPPQAMGMTFSEAGPVPAQGQIAQQVFWYTAFTADMT
KKGLPVVNADGSPKWRMAPSPYGPYWKQGMQNGYQDVGSWTFFKNTDPNRLAAAWLYAQF
VTSKTVSLKKSLTGLTFIRDSDIHHEYLTKNAAQYGGLIEFYRSPARVAWTPTGTNVPDY
PKLAQLWWKNVATAVTGEKTPQAAMDNLAEEMDQVMGRLQRAGMTNCAPKLNPKGDPAKW
LSDDHAPWKKLANEKPKGETIAYDKLLQAWKEGKVR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory