Comparing RR42_RS13775 FitnessBrowser__Cup4G11:RR42_RS13775 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
26% identity, 98% coverage: 6:277/277 of query aligns to 3:279/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
26% identity, 73% coverage: 76:277/277 of query aligns to 87:294/296 of P68183
>RR42_RS13775 FitnessBrowser__Cup4G11:RR42_RS13775
MREAKREAKQSATYWRAVFLVVYLVFAILPIYWMLNMSFKSNEEIVSTLSLWPNDFTLEH
YKTIFTDPSWYSGYINSMIYVAMNTVISITVALPAAYAFSRYRFIGDKHVFFWLLTNRMT
PPAVFLLPFFQLYTTIGLMDTHLGVALAHLVFNVPLAVWILEGFMSGVPREIDETAYVDG
YSFGRFFITIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIVATMTRTVSASG
MDWGVLAAAGVLTIVPGGIVIWFVRHYIAKGFAMGRV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory