Comparing RR42_RS13780 FitnessBrowser__Cup4G11:RR42_RS13780 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
30% identity, 85% coverage: 12:263/297 of query aligns to 33:286/313 of P94529
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
30% identity, 92% coverage: 5:278/297 of query aligns to 4:274/285 of 7cagA
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
27% identity, 79% coverage: 39:272/297 of query aligns to 233:483/490 of 4ki0F
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
27% identity, 79% coverage: 39:272/297 of query aligns to 248:498/514 of P02916
>RR42_RS13780 FitnessBrowser__Cup4G11:RR42_RS13780
MSTLKPVNQKAWLLVIPVVLCVAFSAILPLMTIVNYSVQDIISPERRVFVGTEWFRTVLR
DGELHDALLRQLGFSLAVLAVEIPLGILLALSMPAKGVKASAVLVVIALSLLIPWNVVGT
IWQIFGRTDIGLLGAALAGMGFAYNYTGSAVDAWFTVLVMDVWHWTPLVALLCYAGLRAI
PDAYYQAAQIDGASRLAVFRYIQLPKLRGVLMIAVLLRFMDSFMIYTEPFVLTGGGPGNA
TTFLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLMCFILYNWMQRAGTAGSEDMPNA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory