Comparing RR42_RS13815 FitnessBrowser__Cup4G11:RR42_RS13815 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
Q9SS48 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial; Protein SUGAR-DEPENDENT 6; EC 1.1.5.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
37% identity, 99% coverage: 3:531/534 of query aligns to 52:615/629 of Q9SS48
3da1A X-ray structure of the glycerol-3-phosphate dehydrogenase from bacillus halodurans complexed with fad. Northeast structural genomics consortium target bhr167.
33% identity, 94% coverage: 23:525/534 of query aligns to 16:478/496 of 3da1A
2rgoB Structure of alpha-glycerophosphate oxidase from streptococcus sp.: A template for the mitochondrial alpha-glycerophosphate dehydrogenase (see paper)
30% identity, 89% coverage: 48:523/534 of query aligns to 39:509/530 of 2rgoB
Sites not aligning to the query:
2rgoA Structure of alpha-glycerophosphate oxidase from streptococcus sp.: A template for the mitochondrial alpha-glycerophosphate dehydrogenase (see paper)
30% identity, 89% coverage: 48:523/534 of query aligns to 41:538/557 of 2rgoA
Sites not aligning to the query:
2qcuB Crystal structure of glycerol-3-phosphate dehydrogenase from escherichia coli (see paper)
29% identity, 86% coverage: 52:508/534 of query aligns to 30:491/501 of 2qcuB
Sites not aligning to the query:
2r46A Crystal structure of escherichia coli glycerol-3-phosphate dehydrogenase in complex with 2-phosphopyruvic acid. (see paper)
29% identity, 86% coverage: 52:508/534 of query aligns to 30:491/495 of 2r46A
Sites not aligning to the query:
2r45A Crystal structure of escherichia coli glycerol-3-phosphate dehydrogenase in complex with 2-phospho-d-glyceric acid (see paper)
29% identity, 86% coverage: 52:508/534 of query aligns to 30:491/495 of 2r45A
Sites not aligning to the query:
Q9HUH4 Probable FAD-dependent oxidoreductase PA4991; EC 1.-.-.- from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
36% identity, 12% coverage: 27:90/534 of query aligns to 8:71/391 of Q9HUH4
Sites not aligning to the query:
>RR42_RS13815 FitnessBrowser__Cup4G11:RR42_RS13815
MQTLHTPILPPERATLLATLEREPKWDVIVIGGGATGLGTAVDAASRGYRTLLVEAADFA
KGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLARNAPHLVWPLGFVVPAYQLFDQP
FYGIGLKLYDMLAGGLNLSGSRWLNHRETLAAAPTLAEHVGGRPLRGGNLYFDGQFDDAR
LAIALMRTLFDVGGTAINYLRVSGLSQRNGVIDGVTVQDVLGDASFDLKASCVINATGVW
VDAVRQMEDGQARSMVAPSQGVHLTLPRSFLPGDRAILIPKTDDGRVLFVVPWNGHTIIG
TTDTPRKDLPLEPRAGADDVDFILETATRYLSRAPTRADVTSVWAGLRPLVKATGEASTA
SLSREHTILVSKAGLITVTGGKWTTYRKMAEDVVGTAIQRQMLPAAPCVTADLPLHGAQG
LPANLPAPGSGSPDRYYGNEAGMLHTLPGNDEMLVPGAGLTAAHVRFAARFELARRVEDV
LARRNRALFLEASAASAAAPRVAEILAEEHGHDAAWQAAEVASFRELASGYMLA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory