SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS13875 RR42_RS13875 sodium:solute symporter to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

Q92911 Sodium/iodide cotransporter; Na(+)/I(-) cotransporter; Natrium iodide transporter; Sodium-iodide symporter; Na(+)/I(-) symporter; Solute carrier family 5 member 5 from Homo sapiens (Human) (see 3 papers)
24% identity, 25% coverage: 68:237/683 of query aligns to 45:207/643 of Q92911

query
sites
Q92911
N
 
E
E
 
D
Y
 
F
Y
 
F
V
 
T
A
 
G
G
 
G
R
 
R
R
 
R
V
 
L
P
 
A
A
 
A
L
 
L
F
 
P
N
 
V
G
 
G
M
 
L
A
 
S
I
 
L
A
 
S
A
 
A
D
 
S
W
 
F
M
 
M
S
 
S
A
 
A
A
 
V
S
 
Q
F
 
V
I
 
L
G
 
G
L
 
V
A
 
P
G
 
S
I
 
E
L
 
A
F
 
Y
A
 
R
S
 
Y
G
 
G
Y
 
L
E
 
K
G
 
F
L
 
L
A
 
W
Y
 
M
V
 
C
M
 
L
G
 
G
W
 
Q
T
 
L
G
 
L
G
 
N
Y
 
S
C
 
V
L
 
L
V
 
T
A
|
A
F
 
L
L
 
L
L
 
F
A
 
M
P
 
P
Y
 
V
L
 
F
R
 
Y
K
 
R
Y
 
L
G
 
G
G
 
L
Y
 
T
T
 
S
I
 
T
P
 
Y
D
 
E
F
 
Y
L
 
L
A
 
E
A
 
M
R
 
R
Y
 
F
G
 
S
N
 
R
G
 
A
K
 
-
P
 
-
G
 
-
G
 
-
N
 
-
M
 
-
P
 
-
V
 
V
R
 
R
A
 
L
I
 
C
A
 
G
V
 
T
M
 
L
A
 
Q
A
 
Y
S
 
I
L
 
V
C
 
A
S
 
T
F
 
M
V
 
L
Y
 
Y
L
 
T
V
 
G
A
 
I
Q
 
V
I
 
I
Q
 
Y
G
 
A
V
 
P
G
 
A
L
 
L
I
 
I
V
 
L
T
 
N
R
 
Q
F
 
V
I
 
T
G
 
G
V
 
L
E
 
D
F
 
I
A
 
W
V
 
A
G
 
S
V
 
L
F
 
-
F
 
-
G
 
-
L
 
L
A
 
S
G
 
T
I
 
G
L
 
I
V
 
I
C
 
C
S
 
T
F
 
F
-
 
Y
-
 
T
-
 
A
L
 
V
G
 
G
G
 
G
M
 
M
R
 
K
A
 
A
V
 
V
T
 
V
W
 
W
T
 
T
Q
 
D
V
 
V
A
 
F
Q
 
Q
Y
 
V
I
 
V
M
 
V
L
 
M
I
 
L
A
 
S
A
 
G
F
 
F
L
 
W
V
 
V
T
 
V
V
 
L
S
 
A

Sites not aligning to the query:

P07117 Sodium/proline symporter; Proline carrier; Proline permease; Propionate transporter from Escherichia coli (strain K12) (see 4 papers)
25% identity, 28% coverage: 48:235/683 of query aligns to 7:201/502 of P07117

query
sites
P07117
L
 
M
F
 
L
V
 
V
T
 
T
I
 
F
A
 
C
I
 
V
Y
 
Y
A
 
I
-
 
F
-
 
G
-
 
M
-
 
I
C
 
L
I
 
I
G
 
G
L
 
F
I
 
I
C
 
A
-
 
W
-
 
R
R
 
S
T
 
T
S
 
K
D
 
N
L
 
F
N
 
D
E
 
D
Y
 
Y
Y
 
I
V
 
L
A
 
G
G
 
G
R
 
R
R
 
S
V
 
L
P
 
G
A
 
P
L
 
F
F
 
V
N
 
T
G
 
A
M
 
L
A
 
S
I
 
A
A
 
G
A
 
A
D
 
S
W
 
D
M
 
M
S
 
S
A
 
G
A
 
W
S
 
L
F
 
L
I
 
M
G
 
G
L
 
L
A
 
P
G
 
G
I
 
A
L
 
V
F
 
F
A
 
L
S
 
S
G
 
G
Y
 
I
E
 
S
G
 
E
L
 
S
A
 
W
Y
 
I
V
 
A
M
 
I
G
 
G
W
 
L
T
 
T
G
 
L
G
 
G
Y
 
A
C
 
W
L
 
I
V
 
N
A
 
W
F
 
K
L
 
L
L
 
V
A
 
A
P
 
G
Y
 
R
L
 
L
R
 
R
K
 
V
Y
 
H
G
 
T
G
 
E
Y
 
Y
-
 
N
-
 
N
-
 
N
-
 
A
-
 
L
T
 
T
I
 
L
P
 
P
D
 
D
F
 
Y
L
 
F
A
 
T
A
 
G
R
 
R
Y
 
F
G
 
E
N
 
D
G
 
K
K
 
-
P
 
-
G
 
-
G
 
-
N
 
S
M
 
R
P
 
I
V
 
L
R
 
R
A
 
I
I
 
I
A
 
S
V
 
A
M
 
L
A
 
V
A
 
I
S
 
L
L
 
L
C
 
F
S
 
F
F
 
T
V
 
I
Y
 
Y
L
 
C
V
 
A
A
 
S
Q
 
G
I
 
I
Q
 
V
G
 
A
V
 
G
G
 
A
L
 
R
I
 
L
V
 
F
T
 
E
R
 
S
F
 
T
I
 
F
G
 
G
V
 
M
E
 
S
F
 
Y
A
 
E
V
 
T
G
 
A
V
 
L
F
 
W
F
 
A
G
 
G
L
 
A
A
 
A
G
 
A
I
 
T
L
 
I
V
 
L
C
 
Y
S
 
T
F
 
F
L
 
I
G
 
G
G
 
G
M
 
F
R
 
L
A
 
A
V
 
V
T
 
S
W
 
W
T
 
T
Q
 
D
V
 
T
A
 
V
Q
 
Q
Y
 
A
I
 
S
M
 
L
L
 
M
I
 
I
A
 
F
A
 
A
F
 
L
L
 
I
V
 
L
T
 
T

Sites not aligning to the query:

Q9NY91 Probable glucose sensor protein SLC5A4; Solute carrier family 5 member 4 from Homo sapiens (Human) (see paper)
26% identity, 24% coverage: 70:234/683 of query aligns to 58:218/659 of Q9NY91

query
sites
Q9NY91
Y
 
F
Y
 
F
V
 
L
A
 
A
G
 
G
R
 
R
R
 
D
V
 
M
P
 
A
A
 
W
L
 
W
F
 
P
N
 
M
G
 
G
M
 
A
A
 
S
I
 
L
A
 
F
A
 
A
D
 
S
W
 
N
M
 
I
S
 
G
A
 
S
A
 
N
S
 
H
F
 
Y
I
 
V
G
 
G
L
 
L
A
 
A
G
 
G
I
 
T
L
 
G
F
 
A
A
 
A
S
 
S
G
 
G
Y
 
V
E
 
A
G
 
T
L
 
V
A
 
T
Y
 
F
V
 
-
M
 
-
G
 
E
W
 
W
T
 
T
G
 
S
G
 
S
Y
 
V
C
 
M
L
 
L
-
 
L
-
 
I
V
 
L
A
 
G
F
 
W
L
 
I
L
 
F
A
 
V
P
 
P
Y
 
I
L
 
Y
R
 
I
K
 
K
Y
 
S
G
 
G
G
 
V
Y
 
M
T
 
T
I
 
M
P
 
P
D
 
E
F
 
Y
L
 
L
A
 
K
A
 
K
R
 
R
Y
 
F
G
 
G
N
 
-
G
 
-
K
 
-
P
 
-
G
 
G
G
 
E
N
 
R
M
 
L
P
 
Q
V
 
V
R
 
Y
A
 
-
I
 
L
A
 
S
V
 
I
M
 
L
A
 
S
A
 
L
S
 
F
L
 
I
C
 
C
S
 
V
F
 
V
V
 
L
Y
 
L
L
 
I
V
 
S
A
 
A
Q
 
D
I
 
I
Q
 
F
G
 
A
V
 
G
G
 
A
L
 
I
I
 
F
V
 
I
T
 
K
R
 
L
F
 
A
I
 
L
G
 
G
V
 
L
E
 
D
F
 
L
A
 
Y
V
 
L
G
 
A
V
 
I
F
 
F
F
 
I
G
 
L
L
 
L
A
 
A
G
 
M
I
 
T
L
 
A
V
 
V
C
 
Y
S
 
T
F
 
T
L
 
T
G
 
G
G
 
G
M
 
L
R
 
A
A
 
S
V
 
V
T
 
I
W
 
Y
T
 
T
Q
 
D
V
 
T
A
 
L
Q
 
Q
-
 
T
Y
 
I
I
 
I
M
 
M
L
 
L
I
 
I
A
 
G
A
 
S
F
 
F
L
 
I
V
 
L

Sites not aligning to the query:

Query Sequence

>RR42_RS13875 RR42_RS13875 sodium:solute symporter
MPDEQSRFRRRLLLYYGLFTIGLFVFIGMMGLLEHSSGDALWLGYVFLFVTIAIYACIGL
ICRTSDLNEYYVAGRRVPALFNGMAIAADWMSAASFIGLAGILFASGYEGLAYVMGWTGG
YCLVAFLLAPYLRKYGGYTIPDFLAARYGNGKPGGNMPVRAIAVMAASLCSFVYLVAQIQ
GVGLIVTRFIGVEFAVGVFFGLAGILVCSFLGGMRAVTWTQVAQYIMLIAAFLVTVSMIA
WKHHHEALPQLSYGTLLQQLDTRERSIERDPAEQAVREYYRQQAIQMQDRISRLPQSFDE
ERNALSARLQELRLRNAPLREIKTVERERVEFPRDIAAAQQQWNQQREEALARSQPSTPS
TEPYPSPSEAERKTKRLNFVLLVFCLMLGTASLPHILTRLYTTPSVKESRNSVAWAVFFI
ALLYVSAPALAALVKYEFFQHLVGTPYAELPQWVVQWRKVDPPVFGIRDVNGDGIVQWAE
ILIQPDMIVLAAPEIAGLPYVISGLVAAGALAAALSTADGLLLTIANALSHDVFYHMGDR
TASHQRRVTTAKIVLLGVALFASYVTSLRPGNILFLVGAAFSLAASSFFPVLVLAIFWRR
TTAAGAVAGMVAGLGVAVYYIFVNYPFFTRMTGIFGNRWFGVDPIASGAFGVPAGFAVAI
LVSLLTPRNAPVIDRLVTYLRRG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory