Comparing RR42_RS14490 FitnessBrowser__Cup4G11:RR42_RS14490 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q9SIB9 Aconitate hydratase 3, mitochondrial; Aconitase 3; mACO1; Citrate hydro-lyase 3; EC 4.2.1.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
54% identity, 98% coverage: 20:898/901 of query aligns to 115:987/990 of Q9SIB9
Sites not aligning to the query:
P09339 Aconitate hydratase A; ACN; Aconitase; Aconitate/2-methylaconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.- from Bacillus subtilis (strain 168) (see 2 papers)
54% identity, 97% coverage: 21:897/901 of query aligns to 27:904/909 of P09339
Sites not aligning to the query:
A0QX20 Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
51% identity, 98% coverage: 21:901/901 of query aligns to 25:941/943 of A0QX20
2b3xA Structure of an orthorhombic crystal form of human cytosolic aconitase (irp1) (see paper)
52% identity, 96% coverage: 38:898/901 of query aligns to 33:886/888 of 2b3xA
P21399 Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Ferritin repressor protein; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Homo sapiens (Human) (see 2 papers)
52% identity, 96% coverage: 38:898/901 of query aligns to 34:887/889 of P21399
3snpA Crystal structure analysis of iron regulatory protein 1 in complex with ferritin h ire RNA (see paper)
50% identity, 96% coverage: 38:898/901 of query aligns to 33:848/850 of 3snpA
P19414 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
28% identity, 82% coverage: 123:865/901 of query aligns to 117:744/778 of P19414
Sites not aligning to the query:
8acnA Crystal structures of aconitase with isocitrate and nitroisocitrate bound (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 67:744/753 of 8acnA
1fghA Complex with 4-hydroxy-trans-aconitate (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 67:744/753 of 1fghA
1amjA Steric and conformational features of the aconitase mechanism (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 67:744/753 of 1amjA
1amiA Steric and conformational features of the aconitase mechanism (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 67:744/753 of 1amiA
1acoA Crystal structure of aconitase with transaconitate bound (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 67:744/753 of 1acoA
1nisA Crystal structure of aconitase with trans-aconitate and nitrocitrate bound (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 67:744/753 of 1nisA
P20004 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus (Bovine) (see 2 papers)
28% identity, 89% coverage: 86:891/901 of query aligns to 95:772/780 of P20004
5acnA Structure of activated aconitase. Formation of the (4fe-4s) cluster in the crystal (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 68:745/754 of 5acnA
1b0kA S642a:fluorocitrate complex of aconitase (see paper)
28% identity, 89% coverage: 86:891/901 of query aligns to 67:744/753 of 1b0kA
P16276 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Sus scrofa (Pig) (see 3 papers)
28% identity, 89% coverage: 86:891/901 of query aligns to 95:772/781 of P16276
Sites not aligning to the query:
P39533 Homocitrate dehydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
27% identity, 79% coverage: 128:836/901 of query aligns to 117:732/789 of P39533
O14289 3-isopropylmalate dehydratase; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
28% identity, 40% coverage: 204:566/901 of query aligns to 135:473/758 of O14289
Sites not aligning to the query:
4kp1A Crystal structure of ipm isomerase large subunit from methanococcus jannaschii (mj0499) (see paper)
25% identity, 43% coverage: 179:569/901 of query aligns to 99:423/423 of 4kp1A
Sites not aligning to the query:
>RR42_RS14490 FitnessBrowser__Cup4G11:RR42_RS14490
MPHNLNKTLKEFKIGPSSKGQFYSLPQLGKALGVAVERLPVSIRVVLESVLRNCDGKKVT
EEHVRQLAHWKPVAERVDEIPFVVARVVLQDFTGVPLLADLAAMRNVAEKMGKNPKKIEP
LVPVDLVVDHSVQIDHFREKNALDLNMKLEFQRNNERYQFMKWGMQAFDTFGVVQPGFGI
VHQVNLEYLARGVHKKDGVYYPDTLVGTDSHTTMINGIGVVGWGVGGIEAEAGMLGQPVY
FLTPDVVGVELKGRLREGVTATDLVLTITEMLRREKVVGKFVEFFGEGTASLALPDRATI
GNMAPEYGATMGFFPVDEKTIDYFKGTGRTEEEIAAFEGYFRAQKMFGVPKAGEIDYTNV
VTLDLGTVAPSLAGPKRPQDRIEIGNVKSTFASLFAKPTAENGFNKDIAELDKTYTTADG
VNVKSGDVLIAAITSCTNTSNPSVLLAAGLLAKKAVEAGLKVAPHIKTSLAPGSRVVTEY
LQAAGLLPYLEKLGFGVTAYGCTTCIGNAGDLTPELNEAITRNDLVAAAVLSGNRNFEAR
IHPNIRANFLASPPLVVAYAIAGNVTRDLMTEPVGTGKGGREIYLGDIWPTSEEIHALMK
YAMDSKVFKINYEQVKKPSKLWAKVKGTKGQVYDWPKSTYIAEPPFFDGFGMEPAATQSS
VRNARALGVFGDSVTTDHISPAGSIKESSPAGKYLLANGVLKADFNSYGSRRGNHEVMMR
GTFANVRIKNLMLPVKADGSRVEGGVTLHQPSGEALSIYDAAMKYIAEGTPTVVFGGEEY
GTGSSRDWAAKGTQLLGVKAVITRSFERIHRSNLVGMGVLPLQFKGSDSVQTLGIVGDET
FDIEGIEGELKPQQDVTLVIKRANGDVQRVPLLLRIDTPIEVDYYNHGGILPFVLRQLLA
A
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory