SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS15935 RR42_RS15935 C4-dicarboxylate ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
26% identity, 50% coverage: 22:310/582 of query aligns to 15:287/427 of 8b01B

query
sites
8b01B
G
 
G
F
 
M
P
 
P
V
 
V
A
 
G
F
 
F
S
 
S
L
 
L
S
 
I
A
 
F
V
 
V
G
 
G
L
 
L
A
 
A
F
 
F
G
 
L
I
 
V
L
 
L
A
 
T
I
 
E
Q
 
S
F
 
T
G
 
G
Y
 
-
F
 
-
P
 
-
V
 
-
S
 
-
F
 
-
L
 
I
Q
 
N
A
 
F
V
 
A
P
 
A
S
 
Q
R
 
Q
V
 
M
F
 
I
G
 
G
S
 
G
V
 
-
L
 
L
A
 
D
N
 
N
E
 
F
L
 
T
L
 
L
L
 
L
A
 
A
I
 
V
P
 
P
F
 
F
F
 
F
T
 
V
F
 
L
M
 
T
G
 
G
A
 
H
I
 
L
L
 
M
E
 
N
K
 
S
C
 
A
G
 
G
L
 
I
A
 
T
E
 
E
D
 
R
M
 
I
L
 
F
D
 
N
S
 
F
M
 
A
G
 
K
Q
 
A
L
 
M
F
 
V
G
 
G
P
 
H
V
 
I
R
 
T
G
 
G
G
 
S
L
 
L
G
 
G
Y
 
H
S
 
V
V
 
N
I
 
I
I
 
L
V
 
A
G
 
S
F
 
L
I
 
L
L
 
F
G
x
S
A
 
G
I
 
M
T
x
S
G
|
G
T
 
S
V
 
A
A
 
L
A
 
A
Q
 
D
V
 
A
I
 
G
A
 
G
M
 
L
A
 
G
M
 
Q
I
 
L
S
 
E
L
 
I
P
 
K
V
 
S
M
 
M
M
 
R
R
 
D
Y
 
A
R
 
K
Y
 
Y
N
 
D
M
 
D
K
 
D
Y
 
F
A
 
A
T
 
G
G
 
G
V
 
L
L
 
T
A
 
A
A
 
A
S
 
S
G
 
C
T
 
I
I
 
I
T
x
G
Q
 
P
L
 
L
V
|
V
P
|
P
P
|
P
S
 
S
L
 
I
V
 
P
L
 
L
V
 
V
V
 
I
L
 
Y
A
 
G
D
 
-
Q
 
-
L
 
-
K
 
-
T
 
-
P
 
V
M
 
V
G
 
S
S
 
N
A
 
T
D
 
S
V
 
I
G
 
G
S
 
A
M
 
L
Y
 
F
L
 
L
G
 
A
A
 
G
W
 
A
G
 
I
P
 
P
S
 
G
V
 
L
I
 
L
-
 
C
Q
 
C
I
 
I
A
 
A
L
 
L
F
 
C
A
 
I
L
 
M
Y
 
T
T
 
Y
F
 
F
V
 
I
L
 
A
T
 
K
R
 
K
I
 
R
K
 
G
P
 
Y
D
 
M
W
 
T
L
 
L
P
 
P
P
 
R
V
 
A
P
 
S
V
 
R
E
 
K
E
 
E
R
 
R
T
 
L
L
 
I
R
 
A
G
 
-
W
 
-
P
 
-
L
 
-
W
 
F
R
 
R
K
 
D
C
 
A
L
 
F
R
 
L
G
 
S
I
 
L
I
 
L
P
 
T
C
 
P
A
 
-
V
 
-
L
 
-
I
 
-
F
 
F
L
 
I
V
 
I
L
 
I
G
 
G
T
 
G
I
 
I
M
 
F
L
 
S
G
 
G
I
 
K
A
 
F
T
 
T
P
 
P
T
 
T
E
 
E
S
 
A
G
 
A
A
 
I
M
 
I
G
 
S
A
 
S
V
 
L
G
 
Y
A
 
A
L
 
L
V
 
F
L
 
L
A
 
G
V
 
T
L
 
V
R
 
V
D
 
Y
P
 
K
G
 
S
F
 
L
G
 
-
K
 
T
L
 
M
D
 
D
R
 
K
N
 
F
I
 
I
Y
 
K
R
 
L
I
 
V
G
 
Q
L
 
E
A
 
T
A
 
V
T
 
T
G
 
T
V
 
T
A
 
S
I
 
V
I
 
V
A
 
A
-
 
L
-
 
M
-
 
V
-
 
M
G
 
G
T
 
V
V
 
T
A
 
V
F
 
F
G
 
G

Sites not aligning to the query:

Query Sequence

>RR42_RS15935 RR42_RS15935 C4-dicarboxylate ABC transporter
MIPLEYMPPLMFGGLVVFMLIGFPVAFSLSAVGLAFGILAIQFGYFPVSFLQAVPSRVFG
SVLANELLLAIPFFTFMGAILEKCGLAEDMLDSMGQLFGPVRGGLGYSVIIVGFILGAIT
GTVAAQVIAMAMISLPVMMRYRYNMKYATGVLAASGTITQLVPPSLVLVVLADQLKTPMG
SADVGSMYLGAWGPSVIQIALFALYTFVLTRIKPDWLPPVPVEERTLRGWPLWRKCLRGI
IPCAVLIFLVLGTIMLGIATPTESGAMGAVGALVLAVLRDPGFGKLDRNIYRIGLAATGV
AIIAGTVAFGSHAFRIPLALVYLVITWLLLRAGQLTALRGLIIEAYQSTARITAMVVFIL
IGSTCFSVVFQGVDGGAWVEHMFTSLPGGWIGFLLVVNLFIFFLAFFLDFFEIAFIVVPM
LAPVAVKVLAPVVADSMGGNPEAAATAALVWFGVMLCVNMQTSFMHPPFGFALFYLRGIA
PKEVKSSDIYWGALPWVGLQMIMVVLVMFWPGLVTMFLDKGSLHHSNAAEVTIPLGGESP
GGAASVPAPVPGGRSEPGTLELPAAPADSEPATPQFEFDKKK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory