Comparing RR42_RS15935 RR42_RS15935 C4-dicarboxylate ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
26% identity, 50% coverage: 22:310/582 of query aligns to 15:287/427 of 8b01B
Sites not aligning to the query:
>RR42_RS15935 RR42_RS15935 C4-dicarboxylate ABC transporter
MIPLEYMPPLMFGGLVVFMLIGFPVAFSLSAVGLAFGILAIQFGYFPVSFLQAVPSRVFG
SVLANELLLAIPFFTFMGAILEKCGLAEDMLDSMGQLFGPVRGGLGYSVIIVGFILGAIT
GTVAAQVIAMAMISLPVMMRYRYNMKYATGVLAASGTITQLVPPSLVLVVLADQLKTPMG
SADVGSMYLGAWGPSVIQIALFALYTFVLTRIKPDWLPPVPVEERTLRGWPLWRKCLRGI
IPCAVLIFLVLGTIMLGIATPTESGAMGAVGALVLAVLRDPGFGKLDRNIYRIGLAATGV
AIIAGTVAFGSHAFRIPLALVYLVITWLLLRAGQLTALRGLIIEAYQSTARITAMVVFIL
IGSTCFSVVFQGVDGGAWVEHMFTSLPGGWIGFLLVVNLFIFFLAFFLDFFEIAFIVVPM
LAPVAVKVLAPVVADSMGGNPEAAATAALVWFGVMLCVNMQTSFMHPPFGFALFYLRGIA
PKEVKSSDIYWGALPWVGLQMIMVVLVMFWPGLVTMFLDKGSLHHSNAAEVTIPLGGESP
GGAASVPAPVPGGRSEPGTLELPAAPADSEPATPQFEFDKKK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory