Comparing RR42_RS15940 FitnessBrowser__Cup4G11:RR42_RS15940 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
6q6iA Lysine decarboxylase a from pseudomonas aeruginosa
50% identity, 100% coverage: 3:754/754 of query aligns to 4:749/749 of 6q6iA
2vycA Crystal structure of acid induced arginine decarboxylase from e. Coli (see paper)
38% identity, 99% coverage: 7:754/754 of query aligns to 3:754/755 of 2vycA
P28629 Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli (strain K12) (see paper)
38% identity, 99% coverage: 7:754/754 of query aligns to 3:754/755 of P28629
5xx1G Crystal structure of arginine decarboxylase (adia) from salmonella typhimurium (see paper)
37% identity, 99% coverage: 7:754/754 of query aligns to 4:734/735 of 5xx1G
6q7lA Inducible lysine decarboxylase (see paper)
38% identity, 94% coverage: 24:735/754 of query aligns to 19:695/711 of 6q7lA
3n75A X-ray crystal structure of the escherichia coli inducible lysine decarboxylase ldci (see paper)
38% identity, 94% coverage: 24:735/754 of query aligns to 19:695/711 of 3n75A
1c4kA Ornithine decarboxylase mutant (gly121tyr) (see paper)
34% identity, 85% coverage: 96:736/754 of query aligns to 52:699/728 of 1c4kA
1ordA Crystallographic structure of a plp-dependent ornithine decarboxylase from lactobacillus 30a to 3.1 angstroms resolution (see paper)
34% identity, 85% coverage: 96:736/754 of query aligns to 52:701/730 of 1ordA
2x3lB Crystal structure of the orn_lys_arg decarboxylase family protein sar0482 from methicillin-resistant staphylococcus aureus (see paper)
23% identity, 42% coverage: 152:464/754 of query aligns to 1:264/423 of 2x3lB
>RR42_RS15940 FitnessBrowser__Cup4G11:RR42_RS15940
MKFRFPVIIIDEDFRSENISGSGIRALAQAIEQEGMEVMGLTSYGDLTSFAQQSSRASSF
IVSIDDDEFVSEDDRPEAAAIEKLRAFVNEVRRRNTDLPIFLYGETRTSRHIPNDILREL
HGFIHMFEDTPEFVARHIIREARVYLDSLAPPFFKALIAYAQDSSYSWHCPGHSGGVAFL
KSPVGQVFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFNSDHMYFVTNG
TSTSNKMVWHANVAPGDIVVVDRNCHKSILHAIMMTGAIPVFLMPTRNHYGIIGPIPKSE
FDPETIRRKIAAHPFASQAKNQKPRILTITQGTYDGVLYNAEQIKEMLATEIDTLHFDEA
WLPHAAFHDFYHNMHAIGRDRPRSKDALVFATQSTHKLLAGLSQASQILVQDSDTRKLDR
YRFNEAYLMHTSTSPQYSIIASCDVAAAMMEAPGGTALVEESIQEAMDFRRAMRKVEGDY
DAGNNGDWWFKVWGPEALAEDDIGDREEWMLKANERWHGFGDLADGFNLLDPIKATIITP
GLDVDGEFSDRGIPAAIVTKYLAEHGIIIEKTGLYSFFIMFTIGITKGRWNSLVTELQQF
KDDYDQNQPLWRVLPEFVGKHPQYEKLGLRDLCDAIHSVYKANDVARVTTEMYLSDMEPA
MKPSDAWAMMAHREIERVAVDELEGRVTAILLTPYPPGIPLLIPGERFNRIIVQYLKFAR
EFNKLFPGFETDIHGLVEEEVEGGGKAYFVDCVK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory