SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS16450 FitnessBrowser__Cup4G11:RR42_RS16450 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
37% identity, 100% coverage: 1:211/211 of query aligns to 1:211/214 of 4ymwC

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4ymwC
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E

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
37% identity, 100% coverage: 1:211/211 of query aligns to 1:211/215 of 4ymtC

query
sites
4ymtC
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E

Query Sequence

>RR42_RS16450 FitnessBrowser__Cup4G11:RR42_RS16450
MNIDFVQVLPYLPILLKAALLTILLAVVTQVCGTVFGLLLALGRDSRHAVLRGAAFIYIW
IFRGTPVLLHLFFVYYAAPMFGLRLEALPAAIIALSMSSAAYNAEIIRAGIRAVHRGQRE
AAQAVGMTNPRILRHVILPQATRIVLPPYMGNFISHTKSTSLASVITVPELMLSAQTIYS
STYRAVEVLTIAGAIYLALTTVLTLVQLHFE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory