SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS16895 FitnessBrowser__Cup4G11:RR42_RS16895 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2q7sB Crystal structure of n-formylglutamate amidohydrolase (yp_297560.1) from ralstonia eutropha jmp134 at 2.00 a resolution
29% identity, 82% coverage: 18:239/271 of query aligns to 15:249/280 of 2q7sB

query
sites
2q7sB
P
 
P
M
 
L
L
 
V
V
 
C
S
 
D
M
 
S
P
 
P
H
|
H
V
 
S
G
 
G
T
 
T
H
 
F
L
 
Y
P
 
P
A
 
A
C
 
D
V
 
F
S
 
G
D
 
A
R
 
-
L
 
V
T
 
V
A
 
A
E
 
P
A
 
E
R
 
R
T
 
L
V
 
R
P
 
G
D
 
G
T
 
E
D
|
D
W
 
T
H
 
H
L
 
V
E
 
D
R
 
A
L
 
L
Y
 
W
D
 
E
F
 
A
A
 
V
R
 
P
E
 
R
L
 
V
G
 
G
A
 
G
S
 
T
I
 
L
L
 
L
V
 
A
A
 
A
T
 
T
H
 
F
S
 
P
R
 
R
Y
 
V
V
 
Y
V
 
I
D
 
D
L
 
P
N
 
N
R
 
R
P
 
M
P
 
L
D
 
D
N
 
D
A
 
I
N
 
D
-
 
P
-
 
A
-
 
Q
-
 
L
-
 
E
-
 
G
-
 
P
-
 
W
-
 
P
-
 
T
-
 
P
L
 
L
Y
 
A
P
 
P
G
 
G
Q
 
E
D
 
K
T
 
T
T
 
R
-
 
L
-
 
G
-
 
Y
G
 
G
L
 
L
C
 
I
P
 
W
V
 
S
D
 
N
T
 
V
F
 
D
D
 
A
K
 
A
T
 
T
P
 
P
I
 
I
Y
 
Y
A
 
D
D
 
R
A
 
K
S
 
L
G
 
T
L
 
V
P
 
-
A
 
-
D
 
-
D
 
A
E
 
E
I
 
V
A
 
Q
A
 
R
R
 
R
R
 
I
D
 
N
A
 
R
I
 
Y
W
 
Y
R
 
R
P
 
P
Y
 
Y
H
 
H
G
 
A
A
 
A
L
 
L
A
 
T
E
 
E
E
 
A
L
 
V
A
 
E
R
 
G
L
 
A
R
 
Y
A
 
Q
E
 
R
H
 
F
G
 
G
T
 
A
V
 
V
A
 
W
L
 
H
W
 
L
D
 
N
A
 
L
H
|
H
S
 
S
-
 
M
-
 
P
-
 
N
-
 
N
-
 
A
-
 
Y
-
 
E
-
 
R
I
 
L
R
 
K
S
 
I
V
 
Q
L
 
S
P
 
P
R
 
R
F
 
-
F
 
-
E
 
-
G
 
-
K
 
P
L
 
L
T
 
A
D
 
D
F
 
F
N
 
V
L
 
L
G
 
G
T
 
D
A
 
R
N
 
D
G
 
G
A
 
T
S
 
T
C
 
C
D
 
E
A
 
P
A
 
G
L
 
L
A
 
V
N
 
D
Q
 
-
L
 
L
L
 
V
D
 
E
I
 
R
A
 
E
G
 
L
A
 
R
L
 
E
P
 
K
G
 
G
Y
 
Y
T
 
T
S
 
V
V
 
A
L
 
R
N
 
N
G
 
D
R
 
P
F
 
Y
K
 
K
G
 
G
G
 
V
Y
 
Q
I
 
L
T
 
I
R
 
A
Q
 
Q
Y
 
I
G
 
G
A
 
R
P
 
P
A
 
A
Q
 
E
G
 
R
V
 
R
Q
 
N
A
 
S
V
 
L
Q
 
Q
L
 
I
E
 
E
L
 
I
T
 
R
Q
 
R
S
 
P
A
 
L
Y
 
Y
M
 
M
S
 
E
E
 
E

Query Sequence

>RR42_RS16895 FitnessBrowser__Cup4G11:RR42_RS16895
MAFSTDTPAFTLHRGTRPMLVSMPHVGTHLPACVSDRLTAEARTVPDTDWHLERLYDFAR
ELGASILVATHSRYVVDLNRPPDNANLYPGQDTTGLCPVDTFDKTPIYADASGLPADDEI
AARRDAIWRPYHGALAEELARLRAEHGTVALWDAHSIRSVLPRFFEGKLTDFNLGTANGA
SCDAALANQLLDIAGALPGYTSVLNGRFKGGYITRQYGAPAQGVQAVQLELTQSAYMSET
YPFAYDEARATRIQPTLKTMLETVLGYVEAR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory