Comparing RR42_RS16935 FitnessBrowser__Cup4G11:RR42_RS16935 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
27% identity, 49% coverage: 132:273/290 of query aligns to 107:251/265 of 8wm8B
>RR42_RS16935 FitnessBrowser__Cup4G11:RR42_RS16935
MTQVHIGSPAAGAATTPAPAAVTPVAARRHPWLAPLAPVTQRARWVLGLSFFVVFFAAWA
AVTLGGMVPRNFLADPATMAHEGLLLFTEYNFIGDIGMTVWRVLGGFVLAAALAVPLGIF
MGAYKAAEAFFEPFVSFCRYLPASAFIPLLILWAGIGEAQKVLVIFIGSFFQIVLMVAVA
VGGARRDLVEAAYTLGANSSGIVRRVLIPGAAPEIAEILRLVLGWAWTYVIVAELIGSSS
GIGHMITDSQALLNTGQIIFGIIVIGCIGLVSDLAFKLANQRLFPWSSIK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory