SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS16935 FitnessBrowser__Cup4G11:RR42_RS16935 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
27% identity, 49% coverage: 132:273/290 of query aligns to 107:251/265 of 8wm8B

query
sites
8wm8B
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D
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D

Query Sequence

>RR42_RS16935 FitnessBrowser__Cup4G11:RR42_RS16935
MTQVHIGSPAAGAATTPAPAAVTPVAARRHPWLAPLAPVTQRARWVLGLSFFVVFFAAWA
AVTLGGMVPRNFLADPATMAHEGLLLFTEYNFIGDIGMTVWRVLGGFVLAAALAVPLGIF
MGAYKAAEAFFEPFVSFCRYLPASAFIPLLILWAGIGEAQKVLVIFIGSFFQIVLMVAVA
VGGARRDLVEAAYTLGANSSGIVRRVLIPGAAPEIAEILRLVLGWAWTYVIVAELIGSSS
GIGHMITDSQALLNTGQIIFGIIVIGCIGLVSDLAFKLANQRLFPWSSIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory