Comparing RR42_RS16960 RR42_RS16960 ABC transporter ATP-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
54% identity, 100% coverage: 1:237/238 of query aligns to 2:238/240 of 1ji0A
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
30% identity, 98% coverage: 6:238/238 of query aligns to 3:236/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
30% identity, 98% coverage: 6:238/238 of query aligns to 3:236/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 98% coverage: 6:238/238 of query aligns to 4:237/241 of 6mbnA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
30% identity, 97% coverage: 6:237/238 of query aligns to 3:235/235 of 6mhzA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
30% identity, 97% coverage: 6:236/238 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
30% identity, 97% coverage: 6:236/238 of query aligns to 3:234/234 of 4p31A
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
29% identity, 95% coverage: 5:230/238 of query aligns to 2:228/241 of 4u00A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
29% identity, 97% coverage: 6:235/238 of query aligns to 3:233/233 of 6b8bA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
28% identity, 98% coverage: 5:238/238 of query aligns to 2:236/240 of 6mjpA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 98% coverage: 5:238/238 of query aligns to 4:254/254 of 1g6hA
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 95% coverage: 5:230/238 of query aligns to 3:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 95% coverage: 5:230/238 of query aligns to 3:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 95% coverage: 5:230/238 of query aligns to 3:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
28% identity, 95% coverage: 5:230/238 of query aligns to 3:230/242 of 2oljA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 98% coverage: 5:237/238 of query aligns to 4:253/253 of 1g9xB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
27% identity, 89% coverage: 15:226/238 of query aligns to 11:224/240 of 4ymuJ
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 98% coverage: 5:238/238 of query aligns to 17:250/378 of P69874
Sites not aligning to the query:
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
24% identity, 95% coverage: 3:228/238 of query aligns to 2:231/501 of P04983
8tzjA Cryo-em structure of vibrio cholerae ftse/ftsx complex (see paper)
29% identity, 79% coverage: 12:200/238 of query aligns to 10:200/220 of 8tzjA
>RR42_RS16960 RR42_RS16960 ABC transporter ATP-binding protein
MKETLLKISGLKVAYGGIQAVKGIDLEIKEGELVTLIGANGAGKTTTMKAITGLQGWAGG
DVEYMGKSIKGVPSYTLLKQGLAMVPEGRGVFARMTITENLQMGAYTRTDEAGIKADIDR
MFGIFPRLKERANQLAGTMSGGEQQMLAMARALMSQPKLLLLDEPSMGLSPIMVAKIFEV
VRDVSALGVTVLLVEQNARLALQAAHRGYVMESGLVTMSGDAKQMLDDPKVRAAYLGE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory