Comparing RR42_RS16965 FitnessBrowser__Cup4G11:RR42_RS16965 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 96% coverage: 7:254/258 of query aligns to 2:235/240 of 6mjpA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 96% coverage: 7:254/258 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 96% coverage: 7:254/258 of query aligns to 4:253/253 of 1g9xB
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 96% coverage: 8:254/258 of query aligns to 3:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
31% identity, 96% coverage: 8:254/258 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
31% identity, 96% coverage: 8:254/258 of query aligns to 3:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 96% coverage: 8:254/258 of query aligns to 4:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
31% identity, 95% coverage: 8:253/258 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
31% identity, 95% coverage: 8:253/258 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
31% identity, 95% coverage: 8:252/258 of query aligns to 3:233/233 of 6b8bA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
32% identity, 96% coverage: 7:254/258 of query aligns to 4:239/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 93% coverage: 7:246/258 of query aligns to 2:227/241 of 4u00A
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
30% identity, 97% coverage: 5:255/258 of query aligns to 4:239/240 of 1ji0A
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 93% coverage: 7:246/258 of query aligns to 3:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 93% coverage: 7:246/258 of query aligns to 3:229/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 93% coverage: 7:246/258 of query aligns to 3:229/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 93% coverage: 7:246/258 of query aligns to 3:229/242 of 2oljA
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 94% coverage: 10:251/258 of query aligns to 6:237/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 94% coverage: 10:251/258 of query aligns to 6:237/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 94% coverage: 10:251/258 of query aligns to 6:237/353 of 1oxuA
>RR42_RS16965 FitnessBrowser__Cup4G11:RR42_RS16965
MSNENLLLSVQGVNKRFGGLQALSDVGLQIKPGEIYGLIGPNGAGKTTFFNVITGLYTPD
SGEFVLGGKAYQPTAVHEVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTKAGLFGAVF
RPPSVRREEHSVEDWAHDLLEYVGIGKYAHFTSRNLSYGHQRRLEIARALATEPKLLALD
EPAAGMNATEKVELRGLLDKIRSDGKTILLIEHDVKLVMGLCNRLTVLDYGKVIAQGLPH
EVQSNPAVIEAYLGTPAH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory